miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>36766_dmo-mir-9c:mirbase
Length = 89
Score = 153 bits (77), Expect = 2e-38
Identities = 86/89 (96%)
Strand = Plus / Plus
Query: 1 atttttgctgtttctttggtattctagctgtagattgtttttacagtttgtatcatctaa 60
||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||
Sbjct: 1 atttttgctgtttctttggtattctagctgtagattgttttcacatattgtatcatctaa 60
Query: 61 agcttttataccaaagctccagcttaaat 89
|||||||||||||||||||||||||||||
Sbjct: 61 agcttttataccaaagctccagcttaaat 89
>36256_dgr-mir-9c:mirbase
Length = 89
Score = 145 bits (73), Expect = 6e-36
Identities = 85/89 (95%)
Strand = Plus / Plus
Query: 1 atttttgctgtttctttggtattctagctgtagattgtttttacagtttgtatcatctaa 60
|||||||||||||||||||||||||||||||||||||||| || | |||||||||||||
Sbjct: 1 atttttgctgtttctttggtattctagctgtagattgtttctatatcttgtatcatctaa 60
Query: 61 agcttttataccaaagctccagcttaaat 89
|||||||||||||||||||||||||||||
Sbjct: 61 agcttttataccaaagctccagcttaaat 89
>36839_dpe-mir-9c:mirbase
Length = 92
Score = 131 bits (66), Expect = 9e-32
Identities = 86/92 (93%), Gaps = 3/92 (3%)
Strand = Plus / Plus
Query: 1 atttttgctgtttctttggtattctagctgtagattgttttt---acagtttgtatcatc 57
|||||||||||||||||||||||||||||||||||||||||| ||| | | |||||||
Sbjct: 1 atttttgctgtttctttggtattctagctgtagattgttttttgcacattgtatatcatc 60
Query: 58 taaagcttttataccaaagctccagcttaaat 89
||||||||||||||||||||||||||||||||
Sbjct: 61 taaagcttttataccaaagctccagcttaaat 92
>36915_dps-mir-9c:mirbase
Length = 92
Score = 131 bits (66), Expect = 9e-32
Identities = 86/92 (93%), Gaps = 3/92 (3%)
Strand = Plus / Plus
Query: 1 atttttgctgtttctttggtattctagctgtagattgttttt---acagtttgtatcatc 57
|||||||||||||||||||||||||||||||||||||||||| ||| | | |||||||
Sbjct: 1 atttttgctgtttctttggtattctagctgtagattgttttttgcacattgtatatcatc 60
Query: 58 taaagcttttataccaaagctccagcttaaat 89
||||||||||||||||||||||||||||||||
Sbjct: 61 taaagcttttataccaaagctccagcttaaat 92
>37418_dwi-mir-9c-1:mirbase
Length = 91
Score = 129 bits (65), Expect = 4e-31
Identities = 85/91 (93%), Gaps = 3/91 (3%)
Strand = Plus / Plus
Query: 2 tttttgctgtttctttggtattctagctgtagattgttttt---acagtttgtatcatct 58
||||||||||||||||||||||||||||||||||||||||| ||| | | ||||||||
Sbjct: 1 tttttgctgtttctttggtattctagctgtagattgttttttgcacattgtatatcatct 60
Query: 59 aaagcttttataccaaagctccagcttaaat 89
|||||||||||||||||||||||||||||||
Sbjct: 61 aaagcttttataccaaagctccagcttaaat 91
>37419_dwi-mir-9c-2:mirbase
Length = 91
Score = 129 bits (65), Expect = 4e-31
Identities = 85/91 (93%), Gaps = 3/91 (3%)
Strand = Plus / Plus
Query: 2 tttttgctgtttctttggtattctagctgtagattgttttt---acagtttgtatcatct 58
||||||||||||||||||||||||||||||||||||||||| ||| | | ||||||||
Sbjct: 1 tttttgctgtttctttggtattctagctgtagattgttttttgcacattgtatatcatct 60
Query: 59 aaagcttttataccaaagctccagcttaaat 89
|||||||||||||||||||||||||||||||
Sbjct: 61 aaagcttttataccaaagctccagcttaaat 91
>36090_dan-mir-9c:mirbase
Length = 92
Score = 115 bits (58), Expect = 5e-27
Identities = 84/92 (91%), Gaps = 3/92 (3%)
Strand = Plus / Plus
Query: 1 atttttgctgtttctttggtattctagctgtagattgttt---ttacagtttgtatcatc 57
|||||||||||||||||||||||||||||||||||||||| ||| | | |||||||
Sbjct: 1 atttttgctgtttctttggtattctagctgtagattgtttcacgcacattgtatatcatc 60
Query: 58 taaagcttttataccaaagctccagcttaaat 89
||||||||||||||||||||||||||||||||
Sbjct: 61 taaagcttttataccaaagctccagcttaaat 92
>36168_der-mir-9c:mirbase
Length = 92
Score = 115 bits (58), Expect = 5e-27
Identities = 84/92 (91%), Gaps = 3/92 (3%)
Strand = Plus / Plus
Query: 1 atttttgctgtttctttggtattctagctgtagattgttt---ttacagtttgtatcatc 57
|||||||||||||||||||||||||||||||||||||||| ||| | | |||||||
Sbjct: 1 atttttgctgtttctttggtattctagctgtagattgtttcgcgcacattgtatatcatc 60
Query: 58 taaagcttttataccaaagctccagcttaaat 89
||||||||||||||||||||||||||||||||
Sbjct: 61 taaagcttttataccaaagctccagcttaaat 92
>36351_dme-mir-9c:mirbase
Length = 92
Score = 115 bits (58), Expect = 5e-27
Identities = 84/92 (91%), Gaps = 3/92 (3%)
Strand = Plus / Plus
Query: 1 atttttgctgtttctttggtattctagctgtagattgttt---ttacagtttgtatcatc 57
|||||||||||||||||||||||||||||||||||||||| ||| | | |||||||
Sbjct: 1 atttttgctgtttctttggtattctagctgtagattgtttcacgcacattgtatatcatc 60
Query: 58 taaagcttttataccaaagctccagcttaaat 89
||||||||||||||||||||||||||||||||
Sbjct: 61 taaagcttttataccaaagctccagcttaaat 92
>36352_dme-mir-9c:mirbase
Length = 92
Score = 115 bits (58), Expect = 5e-27
Identities = 84/92 (91%), Gaps = 3/92 (3%)
Strand = Plus / Plus
Query: 1 atttttgctgtttctttggtattctagctgtagattgttt---ttacagtttgtatcatc 57
|||||||||||||||||||||||||||||||||||||||| ||| | | |||||||
Sbjct: 1 atttttgctgtttctttggtattctagctgtagattgtttcacgcacattgtatatcatc 60
Query: 58 taaagcttttataccaaagctccagcttaaat 89
||||||||||||||||||||||||||||||||
Sbjct: 61 taaagcttttataccaaagctccagcttaaat 92
>37128_dse-mir-9c:mirbase
Length = 92
Score = 115 bits (58), Expect = 5e-27
Identities = 84/92 (91%), Gaps = 3/92 (3%)
Strand = Plus / Plus
Query: 1 atttttgctgtttctttggtattctagctgtagattgttt---ttacagtttgtatcatc 57
|||||||||||||||||||||||||||||||||||||||| ||| | | |||||||
Sbjct: 1 atttttgctgtttctttggtattctagctgtagattgtttcacgcacattgtatatcatc 60
Query: 58 taaagcttttataccaaagctccagcttaaat 89
||||||||||||||||||||||||||||||||
Sbjct: 61 taaagcttttataccaaagctccagcttaaat 92
>37497_dya-mir-9c:mirbase
Length = 92
Score = 115 bits (58), Expect = 5e-27
Identities = 84/92 (91%), Gaps = 3/92 (3%)
Strand = Plus / Plus
Query: 1 atttttgctgtttctttggtattctagctgtagattgttt---ttacagtttgtatcatc 57
|||||||||||||||||||||||||||||||||||||||| ||| | | |||||||
Sbjct: 1 atttttgctgtttctttggtattctagctgtagattgtttcgcgcacattgtatatcatc 60
Query: 58 taaagcttttataccaaagctccagcttaaat 89
||||||||||||||||||||||||||||||||
Sbjct: 61 taaagcttttataccaaagctccagcttaaat 92
>35277_aga-mir-9c:mirbase
Length = 90
Score = 50.1 bits (25), Expect = 3e-07
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 7 gctgtttctttggtattctagctgtagattgtt 39
||||| |||||||||||||||||||||| ||||
Sbjct: 7 gctgtatctttggtattctagctgtagaatgtt 39
>35175_aae-mir-9c:mirbase
Length = 83
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 13 tctttggtattctagctgtagattgtt 39
|||||||||||||||||||||| ||||
Sbjct: 6 tctttggtattctagctgtagaatgtt 32
>35176_aae-mir-9c:mirbase
Length = 83
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 13 tctttggtattctagctgtagattgtt 39
|||||||||||||||||||||| ||||
Sbjct: 6 tctttggtattctagctgtagaatgtt 32
>36007_cqu-mir-9:mirbase
Length = 111
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 13 tctttggtattctagctgtagattgtt 39
|||||||||||||||||||||| ||||
Sbjct: 23 tctttggtattctagctgtagaatgtt 49
