miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>36259_dgr-mir-12:mirbase
          Length = 74

 Score =  139 bits (70), Expect = 3e-34
 Identities = 73/74 (98%)
 Strand = Plus / Plus

                                                                      
Query: 1  tacggttgagtattacatcaggtactggtgtgccatttaactaacaaccagtacttatgt 60
          ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 1  tacggttgagtattacatcaggtactggtgtgccatttaaccaacaaccagtacttatgt 60

                        
Query: 61 catactacgccgtg 74
          ||||||||||||||
Sbjct: 61 catactacgccgtg 74




>36769_dmo-mir-12:mirbase
          Length = 74

 Score =  139 bits (70), Expect = 3e-34
 Identities = 73/74 (98%)
 Strand = Plus / Plus

                                                                      
Query: 1  tacggttgagtattacatcaggtactggtgtgccatttaactaacaaccagtacttatgt 60
          ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 1  tacggttgagtattacatcaggtactggtgtgccaattaactaacaaccagtacttatgt 60

                        
Query: 61 catactacgccgtg 74
          ||||||||||||||
Sbjct: 61 catactacgccgtg 74




>36171_der-mir-12:mirbase
          Length = 74

 Score =  115 bits (58), Expect = 4e-27
 Identities = 70/74 (94%)
 Strand = Plus / Plus

                                                                      
Query: 1  tacggttgagtattacatcaggtactggtgtgccatttaactaacaaccagtacttatgt 60
          |||||||||||||||||||||||||||||||||| |  ||| ||||||||||||||||||
Sbjct: 1  tacggttgagtattacatcaggtactggtgtgccttaaaaccaacaaccagtacttatgt 60

                        
Query: 61 catactacgccgtg 74
          ||||||||||||||
Sbjct: 61 catactacgccgtg 74




>37422_dwi-mir-12:mirbase
          Length = 74

 Score =  115 bits (58), Expect = 4e-27
 Identities = 70/74 (94%)
 Strand = Plus / Plus

                                                                      
Query: 1  tacggttgagtattacatcaggtactggtgtgccatttaactaacaaccagtacttatgt 60
          |||||||||||||||||||||||||||||||||| || | | ||||||||||||||||||
Sbjct: 1  tacggttgagtattacatcaggtactggtgtgcctttaatccaacaaccagtacttatgt 60

                        
Query: 61 catactacgccgtg 74
          ||||||||||||||
Sbjct: 61 catactacgccgtg 74




>36093_dan-mir-12:mirbase
          Length = 74

 Score =  107 bits (54), Expect = 1e-24
 Identities = 69/74 (93%)
 Strand = Plus / Plus

                                                                      
Query: 1  tacggttgagtattacatcaggtactggtgtgccatttaactaacaaccagtacttatgt 60
          ||||| |||||||||||||||||||||||||||| || | | ||||||||||||||||||
Sbjct: 1  tacggctgagtattacatcaggtactggtgtgcctttaatccaacaaccagtacttatgt 60

                        
Query: 61 catactacgccgtg 74
          ||||||||||||||
Sbjct: 61 catactacgccgtg 74




>36357_dme-mir-12:mirbase
          Length = 74

 Score =  107 bits (54), Expect = 1e-24
 Identities = 69/74 (93%)
 Strand = Plus / Plus

                                                                      
Query: 1  tacggttgagtattacatcaggtactggtgtgccatttaactaacaaccagtacttatgt 60
          |||||||||||||||||||||||||||||||||| |  | | ||||||||||||||||||
Sbjct: 1  tacggttgagtattacatcaggtactggtgtgccttaaatccaacaaccagtacttatgt 60

                        
Query: 61 catactacgccgtg 74
          ||||||||||||||
Sbjct: 61 catactacgccgtg 74




>36358_dme-mir-12:mirbase
          Length = 74

 Score =  107 bits (54), Expect = 1e-24
 Identities = 69/74 (93%)
 Strand = Plus / Plus

                                                                      
Query: 1  tacggttgagtattacatcaggtactggtgtgccatttaactaacaaccagtacttatgt 60
          |||||||||||||||||||||||||||||||||| |  | | ||||||||||||||||||
Sbjct: 1  tacggttgagtattacatcaggtactggtgtgccttaaatccaacaaccagtacttatgt 60

                        
Query: 61 catactacgccgtg 74
          ||||||||||||||
Sbjct: 61 catactacgccgtg 74




>37131_dse-mir-12:mirbase
          Length = 74

 Score = 91.7 bits (46), Expect = 6e-20
 Identities = 67/74 (90%)
 Strand = Plus / Plus

                                                                      
Query: 1  tacggttgagtattacatcaggtactggtgtgccatttaactaacaaccagtacttatgt 60
          ||||||||||||||||||||||||||||||||||    | | |||||||||||||| |||
Sbjct: 1  tacggttgagtattacatcaggtactggtgtgcctgaaatccaacaaccagtacttgtgt 60

                        
Query: 61 catactacgccgtg 74
          ||||||||||||||
Sbjct: 61 catactacgccgtg 74




>37207_dsi-mir-12:mirbase
          Length = 74

 Score = 91.7 bits (46), Expect = 6e-20
 Identities = 67/74 (90%)
 Strand = Plus / Plus

                                                                      
Query: 1  tacggttgagtattacatcaggtactggtgtgccatttaactaacaaccagtacttatgt 60
          ||||||||||||||||||||||||||||||||||    | | |||||||||||||| |||
Sbjct: 1  tacggttgagtattacatcaggtactggtgtgcctgaaatccaacaaccagtacttgtgt 60

                        
Query: 61 catactacgccgtg 74
          ||||||||||||||
Sbjct: 61 catactacgccgtg 74




>36842_dpe-mir-12:mirbase
          Length = 74

 Score = 83.8 bits (42), Expect = 2e-17
 Identities = 66/74 (89%)
 Strand = Plus / Plus

                                                                      
Query: 1  tacggttgagtattacatcaggtactggtgtgccatttaactaacaaccagtacttatgt 60
          ||||| |||||||||||||||||||||||||||  |  | | ||||||||||||||||||
Sbjct: 1  tacggctgagtattacatcaggtactggtgtgctttaaatccaacaaccagtacttatgt 60

                        
Query: 61 catactacgccgtg 74
           |||||||||||||
Sbjct: 61 tatactacgccgtg 74




>36918_dps-mir-12:mirbase
          Length = 74

 Score = 83.8 bits (42), Expect = 2e-17
 Identities = 66/74 (89%)
 Strand = Plus / Plus

                                                                      
Query: 1  tacggttgagtattacatcaggtactggtgtgccatttaactaacaaccagtacttatgt 60
          ||||| |||||||||||||||||||||||||||  |  | | ||||||||||||||||||
Sbjct: 1  tacggctgagtattacatcaggtactggtgtgctttaaatccaacaaccagtacttatgt 60

                        
Query: 61 catactacgccgtg 74
           |||||||||||||
Sbjct: 61 tatactacgccgtg 74




>35280_aga-mir-12:mirbase
          Length = 117

 Score = 52.0 bits (26), Expect = 5e-08
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                    
Query: 7  tgagtattacatcaggtactggtgtg 32
          ||||||||||||||||||||||||||
Sbjct: 7  tgagtattacatcaggtactggtgtg 32




>35351_ame-mir-12:mirbase
          Length = 83

 Score = 52.0 bits (26), Expect = 5e-08
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                    
Query: 7  tgagtattacatcaggtactggtgtg 32
          ||||||||||||||||||||||||||
Sbjct: 13 tgagtattacatcaggtactggtgtg 38




>36010_cqu-mir-12:mirbase
          Length = 98

 Score = 52.0 bits (26), Expect = 5e-08
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                    
Query: 6  ttgagtattacatcaggtactggtgt 31
          ||||||||||||||||||||||||||
Sbjct: 65 ttgagtattacatcaggtactggtgt 90




>35179_aae-mir-12:mirbase
          Length = 102

 Score = 50.1 bits (25), Expect = 2e-07
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 7  tgagtattacatcaggtactggtgt 31
          |||||||||||||||||||||||||
Sbjct: 8  tgagtattacatcaggtactggtgt 32




>37605_nlo-mir-12:mirbase
          Length = 64

 Score = 50.1 bits (25), Expect = 2e-07
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 7  tgagtattacatcaggtactggtgt 31
          |||||||||||||||||||||||||
Sbjct: 6  tgagtattacatcaggtactggtgt 30




>37638_nvi-mir-12:mirbase
          Length = 84

 Score = 50.1 bits (25), Expect = 2e-07
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 7  tgagtattacatcaggtactggtgt 31
          |||||||||||||||||||||||||
Sbjct: 13 tgagtattacatcaggtactggtgt 37




>37709_tca-mir-12:mirbase
          Length = 87

 Score = 48.1 bits (24), Expect = 8e-07
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 6  ttgagtattacatcaggtactggt 29
          ||||||||||||||||||||||||
Sbjct: 15 ttgagtattacatcaggtactggt 38




>37710_tca-mir-12:mirbase
          Length = 87

 Score = 48.1 bits (24), Expect = 8e-07
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 6  ttgagtattacatcaggtactggt 29
          ||||||||||||||||||||||||
Sbjct: 15 ttgagtattacatcaggtactggt 38




>34965_isc-mir-12:mirbase
          Length = 101

 Score = 46.1 bits (23), Expect = 3e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 7  tgagtattacatcaggtactggt 29
          |||||||||||||||||||||||
Sbjct: 21 tgagtattacatcaggtactggt 43




>35002_dpu-mir-12:mirbase
          Length = 101

 Score = 46.1 bits (23), Expect = 3e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 7  tgagtattacatcaggtactggt 29
          |||||||||||||||||||||||
Sbjct: 21 tgagtattacatcaggtactggt 43




>38854_lgi-mir-12:mirbase
          Length = 101

 Score = 42.1 bits (21), Expect = 5e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 7  tgagtattacatcaggtactg 27
          |||||||||||||||||||||
Sbjct: 21 tgagtattacatcaggtactg 41




>38734_cte-mir-12:mirbase
          Length = 101

 Score = 42.1 bits (21), Expect = 5e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 7  tgagtattacatcaggtactg 27
          |||||||||||||||||||||
Sbjct: 21 tgagtattacatcaggtactg 41




>35525_bmo-mir-12:mirbase
          Length = 90

 Score = 38.2 bits (19), Expect = 8e-04
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                 
Query: 7  tgagtattacatcaggtactggt 29
          |||||||||| ||||||||||||
Sbjct: 4  tgagtattacttcaggtactggt 26