miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>36775_dmo-mir-31b:mirbase
Length = 127
Score = 190 bits (96), Expect = 2e-49
Identities = 123/128 (96%), Gaps = 3/128 (2%)
Strand = Plus / Plus
Query: 1 caaataatgaatttggcaagatgtcggaatagctgagagcacaaag-tcata-aatccag 58
||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct: 1 caaataatgaatttggcaagatgtcggaatagctgagagcacaaatatcatagaatccag 60
Query: 59 aatttctattttgtgtatttttattgagtacagcggctatgcctcatctagtcaattgca 118
||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 61 aatttatattttgtgtatttt-attgagtacagcggctatgcctcatctagtcaattgca 119
Query: 119 ttcatttg 126
||||||||
Sbjct: 120 ttcatttg 127
>36265_dgr-mir-31b:mirbase
Length = 126
Score = 186 bits (94), Expect = 3e-48
Identities = 118/126 (93%)
Strand = Plus / Plus
Query: 1 caaataatgaatttggcaagatgtcggaatagctgagagcacaaagtcataaatccagaa 60
|||||||||||||||||||||||||||||||||||| ||||||| ||| ||||| ||||
Sbjct: 1 caaataatgaatttggcaagatgtcggaatagctgacagcacaagatcacaaatcaagaa 60
Query: 61 tttctattttgtgtatttttattgagtacagcggctatgcctcatctagtcaattgcatt 120
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 actttattttgtgtatttttattgagtacagcggctatgcctcatctagtcaattgcatt 120
Query: 121 catttg 126
||||||
Sbjct: 121 catttg 126
>36177_der-mir-31b:mirbase
Length = 127
Score = 85.7 bits (43), Expect = 7e-18
Identities = 43/43 (100%)
Strand = Plus / Plus
Query: 1 caaataatgaatttggcaagatgtcggaatagctgagagcaca 43
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 caaataatgaatttggcaagatgtcggaatagctgagagcaca 43
Score = 61.9 bits (31), Expect = 1e-10
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 90 agcggctatgcctcatctagtcaattgcatt 120
|||||||||||||||||||||||||||||||
Sbjct: 91 agcggctatgcctcatctagtcaattgcatt 121
>36369_dme-mir-31b:mirbase
Length = 127
Score = 85.7 bits (43), Expect = 7e-18
Identities = 43/43 (100%)
Strand = Plus / Plus
Query: 1 caaataatgaatttggcaagatgtcggaatagctgagagcaca 43
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 caaataatgaatttggcaagatgtcggaatagctgagagcaca 43
Score = 61.9 bits (31), Expect = 1e-10
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 90 agcggctatgcctcatctagtcaattgcatt 120
|||||||||||||||||||||||||||||||
Sbjct: 91 agcggctatgcctcatctagtcaattgcatt 121
>36370_dme-mir-31b:mirbase
Length = 127
Score = 85.7 bits (43), Expect = 7e-18
Identities = 43/43 (100%)
Strand = Plus / Plus
Query: 1 caaataatgaatttggcaagatgtcggaatagctgagagcaca 43
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 caaataatgaatttggcaagatgtcggaatagctgagagcaca 43
Score = 61.9 bits (31), Expect = 1e-10
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 90 agcggctatgcctcatctagtcaattgcatt 120
|||||||||||||||||||||||||||||||
Sbjct: 91 agcggctatgcctcatctagtcaattgcatt 121
>37137_dse-mir-31b:mirbase
Length = 127
Score = 85.7 bits (43), Expect = 7e-18
Identities = 43/43 (100%)
Strand = Plus / Plus
Query: 1 caaataatgaatttggcaagatgtcggaatagctgagagcaca 43
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 caaataatgaatttggcaagatgtcggaatagctgagagcaca 43
Score = 61.9 bits (31), Expect = 1e-10
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 90 agcggctatgcctcatctagtcaattgcatt 120
|||||||||||||||||||||||||||||||
Sbjct: 91 agcggctatgcctcatctagtcaattgcatt 121
>37213_dsi-mir-31b:mirbase
Length = 127
Score = 85.7 bits (43), Expect = 7e-18
Identities = 43/43 (100%)
Strand = Plus / Plus
Query: 1 caaataatgaatttggcaagatgtcggaatagctgagagcaca 43
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 caaataatgaatttggcaagatgtcggaatagctgagagcaca 43
Score = 61.9 bits (31), Expect = 1e-10
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 90 agcggctatgcctcatctagtcaattgcatt 120
|||||||||||||||||||||||||||||||
Sbjct: 91 agcggctatgcctcatctagtcaattgcatt 121
>37505_dya-mir-31b:mirbase
Length = 127
Score = 85.7 bits (43), Expect = 7e-18
Identities = 43/43 (100%)
Strand = Plus / Plus
Query: 1 caaataatgaatttggcaagatgtcggaatagctgagagcaca 43
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 caaataatgaatttggcaagatgtcggaatagctgagagcaca 43
Score = 61.9 bits (31), Expect = 1e-10
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 90 agcggctatgcctcatctagtcaattgcatt 120
|||||||||||||||||||||||||||||||
Sbjct: 91 agcggctatgcctcatctagtcaattgcatt 121
>36924_dps-mir-31b:mirbase
Length = 89
Score = 71.9 bits (36), Expect = 1e-13
Identities = 36/36 (100%)
Strand = Plus / Plus
Query: 91 gcggctatgcctcatctagtcaattgcattcatttg 126
||||||||||||||||||||||||||||||||||||
Sbjct: 53 gcggctatgcctcatctagtcaattgcattcatttg 88
Score = 65.9 bits (33), Expect = 7e-12
Identities = 36/37 (97%)
Strand = Plus / Plus
Query: 10 aatttggcaagatgtcggaatagctgagagcacaaag 46
|||||||||||||||||||||||||||||||| ||||
Sbjct: 1 aatttggcaagatgtcggaatagctgagagcaaaaag 37
>36099_dan-mir-31b:mirbase
Length = 95
Score = 65.9 bits (33), Expect = 7e-12
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 11 atttggcaagatgtcggaatagctgagagcaca 43
|||||||||||||||||||||||||||||||||
Sbjct: 1 atttggcaagatgtcggaatagctgagagcaca 33
Score = 50.1 bits (25), Expect = 4e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 90 agcggctatgcctcatctagtcaat 114
|||||||||||||||||||||||||
Sbjct: 71 agcggctatgcctcatctagtcaat 95
>36848_dpe-mir-31b:mirbase
Length = 77
Score = 63.9 bits (32), Expect = 3e-11
Identities = 35/36 (97%)
Strand = Plus / Plus
Query: 11 atttggcaagatgtcggaatagctgagagcacaaag 46
||||||||||||||||||||||||||||||| ||||
Sbjct: 1 atttggcaagatgtcggaatagctgagagcaaaaag 36
Score = 52.0 bits (26), Expect = 1e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 91 gcggctatgcctcatctagtcaattg 116
||||||||||||||||||||||||||
Sbjct: 52 gcggctatgcctcatctagtcaattg 77
>37428_dwi-mir-31b:mirbase
Length = 138
Score = 58.0 bits (29), Expect = 2e-09
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 92 cggctatgcctcatctagtcaattgcatt 120
|||||||||||||||||||||||||||||
Sbjct: 104 cggctatgcctcatctagtcaattgcatt 132
Score = 52.0 bits (26), Expect = 1e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 11 atttggcaagatgtcggaatagctga 36
||||||||||||||||||||||||||
Sbjct: 9 atttggcaagatgtcggaatagctga 34
>36098_dan-mir-31a:mirbase
Length = 92
Score = 40.1 bits (20), Expect = 4e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 13 ttggcaagatgtcggaatagctga 36
||||||||||||||| ||||||||
Sbjct: 13 ttggcaagatgtcggcatagctga 36
>36176_der-mir-31a:mirbase
Length = 92
Score = 40.1 bits (20), Expect = 4e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 13 ttggcaagatgtcggaatagctga 36
||||||||||||||| ||||||||
Sbjct: 13 ttggcaagatgtcggcatagctga 36
>36264_dgr-mir-31a:mirbase
Length = 91
Score = 40.1 bits (20), Expect = 4e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 13 ttggcaagatgtcggaatagctga 36
||||||||||||||| ||||||||
Sbjct: 13 ttggcaagatgtcggcatagctga 36
>36367_dme-mir-31a:mirbase
Length = 92
Score = 40.1 bits (20), Expect = 4e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 13 ttggcaagatgtcggaatagctga 36
||||||||||||||| ||||||||
Sbjct: 13 ttggcaagatgtcggcatagctga 36
>36368_dme-mir-31a:mirbase
Length = 92
Score = 40.1 bits (20), Expect = 4e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 13 ttggcaagatgtcggaatagctga 36
||||||||||||||| ||||||||
Sbjct: 13 ttggcaagatgtcggcatagctga 36
>36774_dmo-mir-31a:mirbase
Length = 91
Score = 40.1 bits (20), Expect = 4e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 13 ttggcaagatgtcggaatagctga 36
||||||||||||||| ||||||||
Sbjct: 13 ttggcaagatgtcggcatagctga 36
>36847_dpe-mir-31a:mirbase
Length = 92
Score = 40.1 bits (20), Expect = 4e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 13 ttggcaagatgtcggaatagctga 36
||||||||||||||| ||||||||
Sbjct: 13 ttggcaagatgtcggcatagctga 36
>36923_dps-mir-31a:mirbase
Length = 92
Score = 40.1 bits (20), Expect = 4e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 13 ttggcaagatgtcggaatagctga 36
||||||||||||||| ||||||||
Sbjct: 13 ttggcaagatgtcggcatagctga 36
>37136_dse-mir-31a:mirbase
Length = 92
Score = 40.1 bits (20), Expect = 4e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 13 ttggcaagatgtcggaatagctga 36
||||||||||||||| ||||||||
Sbjct: 13 ttggcaagatgtcggcatagctga 36
>37212_dsi-mir-31a:mirbase
Length = 92
Score = 40.1 bits (20), Expect = 4e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 13 ttggcaagatgtcggaatagctga 36
||||||||||||||| ||||||||
Sbjct: 13 ttggcaagatgtcggcatagctga 36
>37350_dvi-mir-31a:mirbase
Length = 92
Score = 40.1 bits (20), Expect = 4e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 13 ttggcaagatgtcggaatagctga 36
||||||||||||||| ||||||||
Sbjct: 13 ttggcaagatgtcggcatagctga 36
>37427_dwi-mir-31a:mirbase
Length = 88
Score = 40.1 bits (20), Expect = 4e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 13 ttggcaagatgtcggaatagctga 36
||||||||||||||| ||||||||
Sbjct: 14 ttggcaagatgtcggcatagctga 37
>37504_dya-mir-31a:mirbase
Length = 92
Score = 40.1 bits (20), Expect = 4e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 13 ttggcaagatgtcggaatagctga 36
||||||||||||||| ||||||||
Sbjct: 13 ttggcaagatgtcggcatagctga 36
