miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>36269_dgr-mir-87:mirbase
Length = 92
Score = 159 bits (80), Expect = 4e-40
Identities = 89/92 (96%)
Strand = Plus / Plus
Query: 1 catatttcattcgcgcctgtatcttgctgaaccgttacaattgagacatctaaatccggt 60
|||||||||||||||||||||||||||||||||||||| |||| |||||| |||||||||
Sbjct: 1 catatttcattcgcgcctgtatcttgctgaaccgttaccattgtgacatccaaatccggt 60
Query: 61 tgagcaaaatttcaggtgtgtgagaaatttgt 92
||||||||||||||||||||||||||||||||
Sbjct: 61 tgagcaaaatttcaggtgtgtgagaaatttgt 92
>36779_dmo-mir-87:mirbase
Length = 92
Score = 151 bits (76), Expect = 1e-37
Identities = 85/88 (96%)
Strand = Plus / Plus
Query: 5 tttcattcgcgcctgtatcttgctgaaccgttacaattgagacatctaaatccggttgag 64
||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct: 5 tttcattcgcgcctgtatcttgctgaaccgttacaattgtcacatccaaatccggttgag 64
Query: 65 caaaatttcaggtgtgtgagaaatttgt 92
||||||||||||||||||||||||||||
Sbjct: 65 caaaatttcaggtgtgtgagaaatttgt 92
>37433_dwi-mir-87-1:mirbase
Length = 93
Score = 115 bits (58), Expect = 6e-27
Identities = 88/94 (93%), Gaps = 3/94 (3%)
Strand = Plus / Plus
Query: 1 catatttcattcgcgcctgtatcttgctgaaccgtta-caattgaga-catctaaatccg 58
||||||||||||||||||||||||||||||||||||| |||||| || |||| | ||||
Sbjct: 1 catatttcattcgcgcctgtatcttgctgaaccgttaccaattgtgatcatc-atttccg 59
Query: 59 gttgagcaaaatttcaggtgtgtgagaaatttgt 92
||||||||||||||||||||||||||||||||||
Sbjct: 60 gttgagcaaaatttcaggtgtgtgagaaatttgt 93
>37434_dwi-mir-87-2:mirbase
Length = 93
Score = 113 bits (57), Expect = 2e-26
Identities = 85/93 (91%), Gaps = 1/93 (1%)
Strand = Plus / Plus
Query: 1 catatttcattcgcgcctgtatcttgctgaaccgtta-caattgagacatctaaatccgg 59
||||||||||||||||||||||||||||||||||||| |||||| || | | |||||
Sbjct: 1 catatttcattcgcgcctgtatcttgctgaaccgttaccaattgtgatcttcatttccgg 60
Query: 60 ttgagcaaaatttcaggtgtgtgagaaatttgt 92
|||||||||||||||||||||||||||||||||
Sbjct: 61 ttgagcaaaatttcaggtgtgtgagaaatttgt 93
>37509_dya-mir-87:mirbase
Length = 92
Score = 111 bits (56), Expect = 9e-26
Identities = 84/92 (91%), Gaps = 1/92 (1%)
Strand = Plus / Plus
Query: 1 catatttcattcgcgcctgtatcttgctgaaccgttacaattgagacatctaaatccggt 60
|||||||||||||||||||||||||||||||||||||||||| | | | |||||||
Sbjct: 1 catatttcattcgcgcctgtatcttgctgaaccgttacaattatggtct-tcgatccggt 59
Query: 61 tgagcaaaatttcaggtgtgtgagaaatttgt 92
||||||||||||||||||||||||||||||||
Sbjct: 60 tgagcaaaatttcaggtgtgtgagaaatttgt 91
>36103_dan-mir-87:mirbase
Length = 92
Score = 103 bits (52), Expect = 2e-23
Identities = 83/92 (90%), Gaps = 1/92 (1%)
Strand = Plus / Plus
Query: 1 catatttcattcgcgcctgtatcttgctgaaccgttacaattgagacatctaaatccggt 60
|||||||||||||||||||||||||||||||||||||| | | || | ||||||||
Sbjct: 1 catatttcattcgcgcctgtatcttgctgaaccgttaccgatatggca-cagaatccggt 59
Query: 61 tgagcaaaatttcaggtgtgtgagaaatttgt 92
||||||||||||||||||||||||||||||||
Sbjct: 60 tgagcaaaatttcaggtgtgtgagaaatttgt 91
>36181_der-mir-87:mirbase
Length = 92
Score = 99.6 bits (50), Expect = 3e-22
Identities = 84/93 (90%), Gaps = 3/93 (3%)
Strand = Plus / Plus
Query: 1 catatttcattcgcgcctgtatcttgctgaaccgttacaattgagacatctaa-atccgg 59
|||||||||||||||||||||||||||||||||||| | ||| | | ||| ||||||
Sbjct: 1 catatttcattcgcgcctgtatcttgctgaaccgttgccattatggc--ctacgatccgg 58
Query: 60 ttgagcaaaatttcaggtgtgtgagaaatttgt 92
|||||||||||||||||||||||||||||||||
Sbjct: 59 ttgagcaaaatttcaggtgtgtgagaaatttgt 91
>36852_dpe-mir-87:mirbase
Length = 93
Score = 79.8 bits (40), Expect = 3e-16
Identities = 79/92 (85%)
Strand = Plus / Plus
Query: 1 catatttcattcgcgcctgtatcttgctgaaccgttacaattgagacatctaaatccggt 60
||||||||||||||||||||||||||||||||||| | || | | | | |||||
Sbjct: 1 catatttcattcgcgcctgtatcttgctgaaccgtagccataatggtctttcatcccggt 60
Query: 61 tgagcaaaatttcaggtgtgtgagaaatttgt 92
||||||||||||||||||||||||||||||||
Sbjct: 61 tgagcaaaatttcaggtgtgtgagaaatttgt 92
>36928_dps-mir-87:mirbase
Length = 98
Score = 79.8 bits (40), Expect = 3e-16
Identities = 79/92 (85%)
Strand = Plus / Plus
Query: 1 catatttcattcgcgcctgtatcttgctgaaccgttacaattgagacatctaaatccggt 60
||||||||||||||||||||||||||||||||||| | || | | | | |||||
Sbjct: 1 catatttcattcgcgcctgtatcttgctgaaccgtagccataatggtctttcatcccggt 60
Query: 61 tgagcaaaatttcaggtgtgtgagaaatttgt 92
||||||||||||||||||||||||||||||||
Sbjct: 61 tgagcaaaatttcaggtgtgtgagaaatttgt 92
>36377_dme-mir-87:mirbase
Length = 99
Score = 69.9 bits (35), Expect = 3e-13
Identities = 35/35 (100%)
Strand = Plus / Plus
Query: 54 atccggttgagcaaaatttcaggtgtgtgagaaat 88
|||||||||||||||||||||||||||||||||||
Sbjct: 55 atccggttgagcaaaatttcaggtgtgtgagaaat 89
>36378_dme-mir-87:mirbase
Length = 99
Score = 69.9 bits (35), Expect = 3e-13
Identities = 35/35 (100%)
Strand = Plus / Plus
Query: 54 atccggttgagcaaaatttcaggtgtgtgagaaat 88
|||||||||||||||||||||||||||||||||||
Sbjct: 55 atccggttgagcaaaatttcaggtgtgtgagaaat 89
>37141_dse-mir-87:mirbase
Length = 92
Score = 69.9 bits (35), Expect = 3e-13
Identities = 35/35 (100%)
Strand = Plus / Plus
Query: 54 atccggttgagcaaaatttcaggtgtgtgagaaat 88
|||||||||||||||||||||||||||||||||||
Sbjct: 53 atccggttgagcaaaatttcaggtgtgtgagaaat 87
>37216_dsi-mir-87:mirbase
Length = 92
Score = 69.9 bits (35), Expect = 3e-13
Identities = 35/35 (100%)
Strand = Plus / Plus
Query: 54 atccggttgagcaaaatttcaggtgtgtgagaaat 88
|||||||||||||||||||||||||||||||||||
Sbjct: 53 atccggttgagcaaaatttcaggtgtgtgagaaat 87
>35361_ame-mir-87-1:mirbase
Length = 100
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 61 tgagcaaaatttcaggtgtgtgag 84
|||||||| |||||||||||||||
Sbjct: 71 tgagcaaagtttcaggtgtgtgag 94
