miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00706;mir-263;AAPU01010625.1/4665-4753 7230:Drosophila
          mojavensis
          Length = 89

 Score =  167 bits (84), Expect = 3e-41
 Identities = 87/88 (98%)
 Strand = Plus / Plus

                                                                      
Query: 1  atctcggcacagttaatggcactggaagaattcacggggtttttataacacgcccgtgat 60
          |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 2  atctcggcacagttaatggcactggaagaattcacggggtttttctaacacgcccgtgat 61

                                      
Query: 61 ctcttagtggcatctatggtgcgggata 88
          ||||||||||||||||||||||||||||
Sbjct: 62 ctcttagtggcatctatggtgcgggata 89




>RF00706;mir-263;AADE01000074.1/40884-40796 46245:Drosophila
          pseudoobscura pseudoobscura
          Length = 89

 Score =  109 bits (55), Expect = 6e-24
 Identities = 78/83 (93%), Gaps = 2/83 (2%)
 Strand = Plus / Plus

                                                                      
Query: 5  cggcacagttaatggcactggaagaattcacggggttttt-ataacacgcccgtgatctc 63
          |||||||||||||||||||||||||||||||||||||||| |  |||  |||||||||||
Sbjct: 6  cggcacagttaatggcactggaagaattcacggggtttttcaataca-acccgtgatctc 64

                                 
Query: 64 ttagtggcatctatggtgcggga 86
          |||||||||||||||||||||||
Sbjct: 65 ttagtggcatctatggtgcggga 87




>RF00706;mir-263;AC011065.6/94391-94302 7227:Drosophila
          melanogaster (fruit fly)
          Length = 90

 Score =  105 bits (53), Expect = 9e-23
 Identities = 79/86 (91%), Gaps = 5/86 (5%)
 Strand = Plus / Plus

                                                                      
Query: 1  atctcggcacagttaatggcactggaagaattcacgggg---tttttataacacgcccgt 57
          |||||||||||||||||||||||||||||||||||||||   ||||||||  |  |||||
Sbjct: 2  atctcggcacagttaatggcactggaagaattcacggggtaatttttatacaa--cccgt 59

                                    
Query: 58 gatctcttagtggcatctatggtgcg 83
          ||||||||||||||||||||||||||
Sbjct: 60 gatctcttagtggcatctatggtgcg 85




>RF00706;mir-263;AAAB01008944.1/325742-325831 180454:Anopheles
          gambiae str. PEST
          Length = 90

 Score = 65.9 bits (33), Expect = 8e-11
 Identities = 55/61 (90%), Gaps = 1/61 (1%)
 Strand = Plus / Plus

                                                                      
Query: 14 taatggcactggaagaattcacggggtttttat-aacacgcccgtgatctcttagtggca 72
          ||||||||||||||||||||||||| ||||| | ||||  |||||| |||||||||||||
Sbjct: 15 taatggcactggaagaattcacgggatttttttcaacattcccgtgttctcttagtggca 74

           
Query: 73 t 73
          |
Sbjct: 75 t 75




>RF00706;mir-263;AAJJ01000157.1/103377-103289 7070:Tribolium
          castaneum (red flour beetle)
          Length = 89

 Score = 54.0 bits (27), Expect = 3e-07
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                     
Query: 15 aatggcactggaagaattcacggggtt 41
          |||||||||||||||||||||||||||
Sbjct: 16 aatggcactggaagaattcacggggtt 42




>RF00706;mir-263;ABJB010285488.1/4151-4241 6945:Ixodes scapularis
          (black-legged tick)
          Length = 91

 Score = 52.0 bits (26), Expect = 1e-06
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                    
Query: 15 aatggcactggaagaattcacggggt 40
          ||||||||||||||||||||||||||
Sbjct: 16 aatggcactggaagaattcacggggt 41




>RF00706;mir-263;AAZX01007729.1/30973-30881 7425:Nasonia
          vitripennis (jewel wasp)
          Length = 93

 Score = 50.1 bits (25), Expect = 5e-06
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 15 aatggcactggaagaattcacgggg 39
          |||||||||||||||||||||||||
Sbjct: 17 aatggcactggaagaattcacgggg 41




>RF00706;mir-263;AADG05003940.1/44836-44746 7460:Apis mellifera
          (honey bee)
          Length = 91

 Score = 50.1 bits (25), Expect = 5e-06
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 15 aatggcactggaagaattcacgggg 39
          |||||||||||||||||||||||||
Sbjct: 16 aatggcactggaagaattcacgggg 40




>RF00706;mir-263;AAWU01014939.1/4076-3988 7176:Culex
          quinquefasciatus (southern house mosquito)
          Length = 89

 Score = 50.1 bits (25), Expect = 5e-06
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 14 taatggcactggaagaattcacggg 38
          |||||||||||||||||||||||||
Sbjct: 15 taatggcactggaagaattcacggg 39




>RF00706;mir-263;AAGE02027430.1/4828-4738 7159:Aedes aegypti
          (yellow fever mosquito)
          Length = 91

 Score = 50.1 bits (25), Expect = 5e-06
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 14 taatggcactggaagaattcacggg 38
          |||||||||||||||||||||||||
Sbjct: 15 taatggcactggaagaattcacggg 39




>RF00706;mir-263;BAAB01106279.1/2818-2907 7091:Bombyx mori
          (domestic silkworm)
          Length = 90

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 15 aatggcactggaagaattcacggg 38
          ||||||||||||||||||||||||
Sbjct: 16 aatggcactggaagaattcacggg 39




>RF00706;mir-263;ABLF01028761.1/10726-10634 7029:Acyrthosiphon
          pisum (pea aphid)
          Length = 93

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                    
Query: 15 aatggcactggaagaattcacggggt 40
          |||||||||| |||||||||||||||
Sbjct: 16 aatggcactgaaagaattcacggggt 41