miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>36807_dmo-mir-304:mirbase
Length = 89
Score = 153 bits (77), Expect = 2e-38
Identities = 83/85 (97%)
Strand = Plus / Plus
Query: 1 gcagcattgattaatctcaatttgtaaatgtgagcgattttaaagtatttgacgcactca 60
||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct: 1 gcagcattgattaatctcaatttgtaaatgtgagcgatttttaactatttgacgcactca 60
Query: 61 ctttgcaattggagattgctcgaga 85
|||||||||||||||||||||||||
Sbjct: 61 ctttgcaattggagattgctcgaga 85
>36301_dgr-mir-304:mirbase
Length = 89
Score = 145 bits (73), Expect = 6e-36
Identities = 85/89 (95%)
Strand = Plus / Plus
Query: 1 gcagcattgattaatctcaatttgtaaatgtgagcgattttaaagtatttgacgcactca 60
|||||||||| |||||||||||||||||||||||||||| | ||| ||||||||||||||
Sbjct: 1 gcagcattgaataatctcaatttgtaaatgtgagcgattattaagaatttgacgcactca 60
Query: 61 ctttgcaattggagattgctcgagattgc 89
|||||||||||||||||||||||||||||
Sbjct: 61 ctttgcaattggagattgctcgagattgc 89
>37463_dwi-mir-304:mirbase
Length = 89
Score = 121 bits (61), Expect = 9e-29
Identities = 79/85 (92%)
Strand = Plus / Plus
Query: 5 cattgattaatctcaatttgtaaatgtgagcgattttaaagtatttgacgcactcacttt 64
|||||||||||||||||||||||||||||||||||| || ||| || |||||||||||
Sbjct: 5 cattgattaatctcaatttgtaaatgtgagcgatttaaatccattcgatgcactcacttt 64
Query: 65 gcaattggagattgctcgagattgc 89
|||||||||||||||||||||||||
Sbjct: 65 gcaattggagattgctcgagattgc 89
>36443_dme-mir-304:mirbase
Length = 88
Score = 113 bits (57), Expect = 2e-26
Identities = 79/85 (92%), Gaps = 1/85 (1%)
Strand = Plus / Plus
Query: 1 gcagcattgattaatctcaatttgtaaatgtgagcgattttaaagtatttgacgcactca 60
|||||||||| ||||||||||||||||||||||||| ||| || ||||||||||||||
Sbjct: 1 gcagcattgaataatctcaatttgtaaatgtgagcggttt-aagccatttgacgcactca 59
Query: 61 ctttgcaattggagattgctcgaga 85
|||||||||||||||||||||||||
Sbjct: 60 ctttgcaattggagattgctcgaga 84
>36444_dme-mir-304:mirbase
Length = 88
Score = 113 bits (57), Expect = 2e-26
Identities = 79/85 (92%), Gaps = 1/85 (1%)
Strand = Plus / Plus
Query: 1 gcagcattgattaatctcaatttgtaaatgtgagcgattttaaagtatttgacgcactca 60
|||||||||| ||||||||||||||||||||||||| ||| || ||||||||||||||
Sbjct: 1 gcagcattgaataatctcaatttgtaaatgtgagcggttt-aagccatttgacgcactca 59
Query: 61 ctttgcaattggagattgctcgaga 85
|||||||||||||||||||||||||
Sbjct: 60 ctttgcaattggagattgctcgaga 84
>36211_der-mir-304:mirbase
Length = 88
Score = 105 bits (53), Expect = 5e-24
Identities = 78/85 (91%), Gaps = 1/85 (1%)
Strand = Plus / Plus
Query: 1 gcagcattgattaatctcaatttgtaaatgtgagcgattttaaagtatttgacgcactca 60
|||||||||| ||||||||||||||||||||||||| ||| | ||||||||||||||
Sbjct: 1 gcagcattgaataatctcaatttgtaaatgtgagcggtttgagcc-atttgacgcactca 59
Query: 61 ctttgcaattggagattgctcgaga 85
|||||||||||||||||||||||||
Sbjct: 60 ctttgcaattggagattgctcgaga 84
>37171_dse-mir-304:mirbase
Length = 88
Score = 105 bits (53), Expect = 5e-24
Identities = 78/85 (91%), Gaps = 1/85 (1%)
Strand = Plus / Plus
Query: 1 gcagcattgattaatctcaatttgtaaatgtgagcgattttaaagtatttgacgcactca 60
|||||||||| ||||||||||||||||||||||||| ||| | ||||||||||||||
Sbjct: 1 gcagcattgaataatctcaatttgtaaatgtgagcggtttgagcc-atttgacgcactca 59
Query: 61 ctttgcaattggagattgctcgaga 85
|||||||||||||||||||||||||
Sbjct: 60 ctttgcaattggagattgctcgaga 84
>37248_dsi-mir-304:mirbase
Length = 88
Score = 105 bits (53), Expect = 5e-24
Identities = 78/85 (91%), Gaps = 1/85 (1%)
Strand = Plus / Plus
Query: 1 gcagcattgattaatctcaatttgtaaatgtgagcgattttaaagtatttgacgcactca 60
|||||||||| ||||||||||||||||||||||||| ||| | ||||||||||||||
Sbjct: 1 gcagcattgaataatctcaatttgtaaatgtgagcggtttgagcc-atttgacgcactca 59
Query: 61 ctttgcaattggagattgctcgaga 85
|||||||||||||||||||||||||
Sbjct: 60 ctttgcaattggagattgctcgaga 84
>37540_dya-mir-304:mirbase
Length = 88
Score = 105 bits (53), Expect = 5e-24
Identities = 78/85 (91%), Gaps = 1/85 (1%)
Strand = Plus / Plus
Query: 1 gcagcattgattaatctcaatttgtaaatgtgagcgattttaaagtatttgacgcactca 60
|||||||||| ||||||||||||||||||||||||| ||| | ||||||||||||||
Sbjct: 1 gcagcattgaataatctcaatttgtaaatgtgagcggtttgagcc-atttgacgcactca 59
Query: 61 ctttgcaattggagattgctcgaga 85
|||||||||||||||||||||||||
Sbjct: 60 ctttgcaattggagattgctcgaga 84
>36965_dps-mir-304:mirbase
Length = 88
Score = 101 bits (51), Expect = 8e-23
Identities = 76/83 (91%), Gaps = 1/83 (1%)
Strand = Plus / Plus
Query: 1 gcagcattgattaatctcaatttgtaaatgtgagcgattttaaagtatttgacgcactca 60
|||||||||| |||||||||||||||||||||||||| ||| | | ||||||| ||||||
Sbjct: 1 gcagcattgaataatctcaatttgtaaatgtgagcga-tttgaggcatttgacacactca 59
Query: 61 ctttgcaattggagattgctcga 83
|||||||| ||||||||||||||
Sbjct: 60 ctttgcaactggagattgctcga 82
>36133_dan-mir-304:mirbase
Length = 88
Score = 97.6 bits (49), Expect = 1e-21
Identities = 77/85 (90%), Gaps = 1/85 (1%)
Strand = Plus / Plus
Query: 1 gcagcattgattaatctcaatttgtaaatgtgagcgattttaaagtatttgacgcactca 60
|||||||||| ||||||||||||||||||||||||||||| | |||||||| |||||
Sbjct: 1 gcagcattgaataatctcaatttgtaaatgtgagcgatttgagcc-atttgacggactca 59
Query: 61 ctttgcaattggagattgctcgaga 85
|||||||| ||||||||||||||||
Sbjct: 60 ctttgcaactggagattgctcgaga 84
