miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00853;mir-304;AAPU01008564.1/42415-42503 7230:Drosophila
mojavensis
Length = 89
Score = 153 bits (77), Expect = 4e-37
Identities = 83/85 (97%)
Strand = Plus / Plus
Query: 1 gcagcattgattaatctcaatttgtaaatgtgagcgattttaaagtatttgacgcactca 60
||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct: 1 gcagcattgattaatctcaatttgtaaatgtgagcgatttttaactatttgacgcactca 60
Query: 61 ctttgcaattggagattgctcgaga 85
|||||||||||||||||||||||||
Sbjct: 61 ctttgcaattggagattgctcgaga 85
>RF00853;mir-304;AAQB01006319.1/7240-7152 7260:Drosophila
willistoni
Length = 89
Score = 121 bits (61), Expect = 2e-27
Identities = 79/85 (92%)
Strand = Plus / Plus
Query: 5 cattgattaatctcaatttgtaaatgtgagcgattttaaagtatttgacgcactcacttt 64
|||||||||||||||||||||||||||||||||||| || ||| || |||||||||||
Sbjct: 5 cattgattaatctcaatttgtaaatgtgagcgatttaaatccattcgatgcactcacttt 64
Query: 65 gcaattggagattgctcgagattgc 89
|||||||||||||||||||||||||
Sbjct: 65 gcaattggagattgctcgagattgc 89
>RF00853;mir-304;AAFS01000251.1/56138-56051 46245:Drosophila
pseudoobscura pseudoobscura
Length = 88
Score = 101 bits (51), Expect = 1e-21
Identities = 76/83 (91%), Gaps = 1/83 (1%)
Strand = Plus / Plus
Query: 1 gcagcattgattaatctcaatttgtaaatgtgagcgattttaaagtatttgacgcactca 60
|||||||||| |||||||||||||||||||||||||| ||| | | ||||||| ||||||
Sbjct: 1 gcagcattgaataatctcaatttgtaaatgtgagcga-tttgaggcatttgacacactca 59
Query: 61 ctttgcaattggagattgctcga 83
|||||||| ||||||||||||||
Sbjct: 60 ctttgcaactggagattgctcga 82
