miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>36812_dmo-mir-309:mirbase
Length = 75
Score = 101 bits (51), Expect = 7e-23
Identities = 70/75 (93%), Gaps = 1/75 (1%)
Strand = Plus / Plus
Query: 1 attatatggtaaactttgttcagttttgccaggctcttt-ttgtgcgcatcactgggtga 59
|||||| ||||||||||||||||||||||| || ||| | ||||||||||||||||||||
Sbjct: 1 attataaggtaaactttgttcagttttgccgggttctatgttgtgcgcatcactgggtga 60
Query: 60 agtttgtcgtataat 74
|||||||||||||||
Sbjct: 61 agtttgtcgtataat 75
>36306_dgr-mir-309-1:mirbase
Length = 76
Score = 56.0 bits (28), Expect = 3e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 47 catcactgggtgaagtttgtcgtataat 74
||||||||||||||||||||||||||||
Sbjct: 49 catcactgggtgaagtttgtcgtataat 76
>36307_dgr-mir-309-2:mirbase
Length = 76
Score = 56.0 bits (28), Expect = 3e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 47 catcactgggtgaagtttgtcgtataat 74
||||||||||||||||||||||||||||
Sbjct: 49 catcactgggtgaagtttgtcgtataat 76
>37469_dwi-mir-309:mirbase
Length = 84
Score = 50.1 bits (25), Expect = 2e-07
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 46 gcatcactgggtgaagtttgtcgtataat 74
|||||||||||||||||||||| ||||||
Sbjct: 29 gcatcactgggtgaagtttgtcttataat 1
Score = 50.1 bits (25), Expect = 2e-07
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 1 attatatggtaaactttgttcagttttgc 29
|||||||| ||||||||||||||||||||
Sbjct: 84 attatatgataaactttgttcagttttgc 56
>36888_dpe-mir-309:mirbase
Length = 68
Score = 46.1 bits (23), Expect = 3e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 1 attatatggtaaactttgttcagttttgcca 31
|||||| | ||||||||||||||||||||||
Sbjct: 1 attatacgataaactttgttcagttttgcca 31
Score = 42.1 bits (21), Expect = 5e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 50 cactgggtgaagtttgtcgtataat 74
|||||||||||||||||| ||||||
Sbjct: 44 cactgggtgaagtttgtcttataat 68
>36971_dps-mir-309:mirbase
Length = 68
Score = 46.1 bits (23), Expect = 3e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 1 attatatggtaaactttgttcagttttgcca 31
|||||| | ||||||||||||||||||||||
Sbjct: 1 attatacgataaactttgttcagttttgcca 31
Score = 42.1 bits (21), Expect = 5e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 50 cactgggtgaagtttgtcgtataat 74
|||||||||||||||||| ||||||
Sbjct: 44 cactgggtgaagtttgtcttataat 68
