miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>36310_dgr-mir-316:mirbase
Length = 87
Score = 168 bits (85), Expect = 4e-43
Identities = 85/85 (100%)
Strand = Plus / Plus
Query: 2 agttctagtcgatttgtctttttccgcttactggcgttttattgagcaacgacaggaaag 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 agttctagtcgatttgtctttttccgcttactggcgttttattgagcaacgacaggaaag 60
Query: 62 ggaaaaaggcgtatttactatgaat 86
|||||||||||||||||||||||||
Sbjct: 61 ggaaaaaggcgtatttactatgaat 85
>36816_dmo-mir-316:mirbase
Length = 87
Score = 141 bits (71), Expect = 9e-35
Identities = 83/87 (95%)
Strand = Plus / Plus
Query: 1 aagttctagtcgatttgtctttttccgcttactggcgttttattgagcaacgacaggaaa 60
|||||||||||||||||||||||||||||||||| ||||||||||| ||||| |||| ||
Sbjct: 1 aagttctagtcgatttgtctttttccgcttactgacgttttattgaacaacggcagggaa 60
Query: 61 gggaaaaaggcgtatttactatgaatt 87
|||||||||||||||||||||||||||
Sbjct: 61 gggaaaaaggcgtatttactatgaatt 87
>36891_dpe-mir-316:mirbase
Length = 89
Score = 139 bits (70), Expect = 4e-34
Identities = 80/82 (97%), Gaps = 1/82 (1%)
Strand = Plus / Plus
Query: 4 ttctagtcgatttgtctttttccgcttactggcgttttatt-gagcaacgacaggaaagg 62
||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct: 4 ttctagtcgatttgtctttttccgcttactggcgttttattcgatcaacgacaggaaagg 63
Query: 63 gaaaaaggcgtatttactatga 84
||||||||||||||||||||||
Sbjct: 64 gaaaaaggcgtatttactatga 85
>36975_dps-mir-316:mirbase
Length = 89
Score = 139 bits (70), Expect = 4e-34
Identities = 80/82 (97%), Gaps = 1/82 (1%)
Strand = Plus / Plus
Query: 4 ttctagtcgatttgtctttttccgcttactggcgttttatt-gagcaacgacaggaaagg 62
||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct: 4 ttctagtcgatttgtctttttccgcttactggcgttttattcgatcaacgacaggaaagg 63
Query: 63 gaaaaaggcgtatttactatga 84
||||||||||||||||||||||
Sbjct: 64 gaaaaaggcgtatttactatga 85
>37472_dwi-mir-316:mirbase
Length = 89
Score = 131 bits (66), Expect = 9e-32
Identities = 79/82 (96%), Gaps = 1/82 (1%)
Strand = Plus / Plus
Query: 4 ttctagtcgatttgtctttttccgcttactggcgttttattgagc-aacgacaggaaagg 62
||||||||||||||||||||||||||||||||||||||||| | | ||||||||||||||
Sbjct: 4 ttctagtcgatttgtctttttccgcttactggcgttttatttaactaacgacaggaaagg 63
Query: 63 gaaaaaggcgtatttactatga 84
||||||||||||||||||||||
Sbjct: 64 gaaaaaggcgtatttactatga 85
>36145_dan-mir-316:mirbase
Length = 89
Score = 123 bits (62), Expect = 2e-29
Identities = 78/82 (95%), Gaps = 1/82 (1%)
Strand = Plus / Plus
Query: 4 ttctagtcgatttgtctttttccgcttactggcgttttatt-gagcaacgacaggaaagg 62
||||||||||||||||||||||||||||||||||||| ||| | |||||||||||||||
Sbjct: 4 ttctagtcgatttgtctttttccgcttactggcgtttaattcaaacaacgacaggaaagg 63
Query: 63 gaaaaaggcgtatttactatga 84
||||||||||||||||||||||
Sbjct: 64 gaaaaaggcgtatttactatga 85
>37553_dya-mir-316-1:mirbase
Length = 89
Score = 123 bits (62), Expect = 2e-29
Identities = 78/82 (95%), Gaps = 1/82 (1%)
Strand = Plus / Plus
Query: 4 ttctagtcgatttgtctttttccgcttactggcgtttta-ttgagcaacgacaggaaagg 62
||||||||||||||||||||||||||||||||||||| | || | |||||||||||||||
Sbjct: 4 ttctagtcgatttgtctttttccgcttactggcgtttcatttcaacaacgacaggaaagg 63
Query: 63 gaaaaaggcgtatttactatga 84
||||||||||||||||||||||
Sbjct: 64 gaaaaaggcgtatttactatga 85
>37554_dya-mir-316-2:mirbase
Length = 89
Score = 123 bits (62), Expect = 2e-29
Identities = 78/82 (95%), Gaps = 1/82 (1%)
Strand = Plus / Plus
Query: 4 ttctagtcgatttgtctttttccgcttactggcgtttta-ttgagcaacgacaggaaagg 62
||||||||||||||||||||||||||||||||||||| | || | |||||||||||||||
Sbjct: 4 ttctagtcgatttgtctttttccgcttactggcgtttcatttcaacaacgacaggaaagg 63
Query: 63 gaaaaaggcgtatttactatga 84
||||||||||||||||||||||
Sbjct: 64 gaaaaaggcgtatttactatga 85
>36227_der-mir-316:mirbase
Length = 89
Score = 115 bits (58), Expect = 5e-27
Identities = 77/82 (93%), Gaps = 1/82 (1%)
Strand = Plus / Plus
Query: 4 ttctagtcgatttgtctttttccgcttactggcgtttta-ttgagcaacgacaggaaagg 62
||||||||||||||||||||||||||||||||||||| | || | |||||||||||||||
Sbjct: 4 ttctagtcgatttgtctttttccgcttactggcgtttcatttcaacaacgacaggaaagg 63
Query: 63 gaaaaaggcgtatttactatga 84
|||||||||||||| |||||||
Sbjct: 64 gaaaaaggcgtattcactatga 85
>36469_dme-mir-316:mirbase
Length = 89
Score = 115 bits (58), Expect = 5e-27
Identities = 77/82 (93%), Gaps = 1/82 (1%)
Strand = Plus / Plus
Query: 4 ttctagtcgatttgtctttttccgcttactggcgttt-tattgagcaacgacaggaaagg 62
||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||
Sbjct: 4 ttctagtcgatttgtctttttccgcttactggcgtttcaattccacaacgacaggaaagg 63
Query: 63 gaaaaaggcgtatttactatga 84
||||||||||||||||||||||
Sbjct: 64 gaaaaaggcgtatttactatga 85
>36470_dme-mir-316:mirbase
Length = 89
Score = 115 bits (58), Expect = 5e-27
Identities = 77/82 (93%), Gaps = 1/82 (1%)
Strand = Plus / Plus
Query: 4 ttctagtcgatttgtctttttccgcttactggcgttt-tattgagcaacgacaggaaagg 62
||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||
Sbjct: 4 ttctagtcgatttgtctttttccgcttactggcgtttcaattccacaacgacaggaaagg 63
Query: 63 gaaaaaggcgtatttactatga 84
||||||||||||||||||||||
Sbjct: 64 gaaaaaggcgtatttactatga 85
>37183_dse-mir-316:mirbase
Length = 89
Score = 115 bits (58), Expect = 5e-27
Identities = 77/82 (93%), Gaps = 1/82 (1%)
Strand = Plus / Plus
Query: 4 ttctagtcgatttgtctttttccgcttactggcgtttta-ttgagcaacgacaggaaagg 62
||||||||||||||||||||||||||||||||||||| | || |||||||||||||||
Sbjct: 4 ttctagtcgatttgtctttttccgcttactggcgtttcatttccacaacgacaggaaagg 63
Query: 63 gaaaaaggcgtatttactatga 84
||||||||||||||||||||||
Sbjct: 64 gaaaaaggcgtatttactatga 85
>37259_dsi-mir-316:mirbase
Length = 89
Score = 115 bits (58), Expect = 5e-27
Identities = 77/82 (93%), Gaps = 1/82 (1%)
Strand = Plus / Plus
Query: 4 ttctagtcgatttgtctttttccgcttactggcgtttta-ttgagcaacgacaggaaagg 62
||||||||||||||||||||||||||||||||||||| | || |||||||||||||||
Sbjct: 4 ttctagtcgatttgtctttttccgcttactggcgtttcatttccacaacgacaggaaagg 63
Query: 63 gaaaaaggcgtatttactatga 84
||||||||||||||||||||||
Sbjct: 64 gaaaaaggcgtatttactatga 85
>35226_aae-mir-316:mirbase
Length = 91
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 12 gatttgtctttttccgcttactg 34
|||||||||||||||||||||||
Sbjct: 15 gatttgtctttttccgcttactg 37
>36046_cqu-mir-316:mirbase
Length = 139
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 12 gatttgtctttttccgcttactg 34
|||||||||||||||||||||||
Sbjct: 32 gatttgtctttttccgcttactg 54
