miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00027;let-7;AAQB01006449.1/358437-358507 7260:Drosophila
willistoni
Length = 71
Score = 141 bits (71), Expect = 1e-33
Identities = 71/71 (100%)
Strand = Plus / Plus
Query: 5 gcaaattgaggtagtaggttgtatagtagtaattattcaatcatactatacaatgtgcta 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gcaaattgaggtagtaggttgtatagtagtaattattcaatcatactatacaatgtgcta 60
Query: 65 gctttctttgc 75
|||||||||||
Sbjct: 61 gctttctttgc 71
>RF00027;let-7;AAPP01015675.1/360249-360318 7217:Drosophila
ananassae
Length = 70
Score = 85.7 bits (43), Expect = 7e-17
Identities = 65/71 (91%), Gaps = 1/71 (1%)
Strand = Plus / Plus
Query: 5 gcaaattgaggtagtaggttgtatagtagtaattattcaatcatactatacaatgtgcta 64
||||||||||||||||||||||||||||| || || |||| |||||||||||||||||
Sbjct: 1 gcaaattgaggtagtaggttgtatagtagcaacta-agaatcgtactatacaatgtgcta 59
Query: 65 gctttctttgc 75
|||||||||||
Sbjct: 60 gctttctttgc 70
>RF00027;let-7;AAIZ01016032.1/2164-2232 7234:Drosophila persimilis
Length = 69
Score = 83.8 bits (42), Expect = 3e-16
Identities = 66/72 (91%), Gaps = 4/72 (5%)
Strand = Plus / Plus
Query: 5 gcaaattgaggtagtaggttgtatagtagtaattattca-atcatactatacaatgtgct 63
||||||||||||||||||||||||||||||| |||| ||| ||||||||||||||||
Sbjct: 1 gcaaattgaggtagtaggttgtatagtagta---cttcagatcgtactatacaatgtgct 57
Query: 64 agctttctttgc 75
||||||||||||
Sbjct: 58 agctttctttgc 69
>RF00027;let-7;AANI01016295.1/2335-2404 7244:Drosophila virilis
Length = 70
Score = 77.8 bits (39), Expect = 2e-14
Identities = 64/71 (90%), Gaps = 1/71 (1%)
Strand = Plus / Plus
Query: 5 gcaaattgaggtagtaggttgtatagtagtaattattcaatcatactatacaatgtgcta 64
||||||||||||||||||||||||||||||| ||| | | ||||||||||| ||||||
Sbjct: 1 gcaaattgaggtagtaggttgtatagtagtattta-tagagcatactatacagcgtgcta 59
Query: 65 gctttctttgc 75
|||||||||||
Sbjct: 60 gctttctttgc 70
>RF00027;let-7;AAPU01010514.1/89793-89724 7230:Drosophila
mojavensis
Length = 70
Score = 77.8 bits (39), Expect = 2e-14
Identities = 64/71 (90%), Gaps = 1/71 (1%)
Strand = Plus / Plus
Query: 5 gcaaattgaggtagtaggttgtatagtagtaattattcaatcatactatacaatgtgcta 64
||||||||||||||||||||||||||||||| ||| | | ||||||||||| ||||||
Sbjct: 1 gcaaattgaggtagtaggttgtatagtagtactta-tagaccatactatacagcgtgcta 59
Query: 65 gctttctttgc 75
|||||||||||
Sbjct: 60 gctttctttgc 70
>RF00027;let-7;AAPT01004257.1/151-220 7222:Drosophila grimshawi
Length = 70
Score = 69.9 bits (35), Expect = 4e-12
Identities = 63/71 (88%), Gaps = 1/71 (1%)
Strand = Plus / Plus
Query: 5 gcaaattgaggtagtaggttgtatagtagtaattattcaatcatactatacaatgtgcta 64
||||||||||||||||||||||||||||||| || || | ||||||||||| |||||
Sbjct: 1 gcaaattgaggtagtaggttgtatagtagtatcta-tctagcatactatacagcttgcta 59
Query: 65 gctttctttgc 75
|||||||||||
Sbjct: 60 gctttctttgc 70
>RF00027;let-7;AASS01032016.1/98-33 7240:Drosophila simulans
Length = 66
Score = 56.0 bits (28), Expect = 7e-08
Identities = 62/68 (91%), Gaps = 4/68 (5%)
Strand = Plus / Plus
Query: 5 gcaaattgaggtagtaggttgtatagtagtaattattcaatcatactatacaatgtgcta 64
|||||||||||||||| ||||||||||||||| || | |||||||||||| ||||||||
Sbjct: 1 gcaaattgaggtagta-gttgtatagtagtaa-tacac-atcatactatac-atgtgcta 56
Query: 65 gctttctt 72
||||||||
Sbjct: 57 gctttctt 64
>RF00027;let-7;BABH01009736.1/23777-23700 7091:Bombyx mori
(domestic silkworm)
Length = 78
Score = 46.1 bits (23), Expect = 6e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 10 ttgaggtagtaggttgtatagta 32
|||||||||||||||||||||||
Sbjct: 6 ttgaggtagtaggttgtatagta 28
>RF00027;let-7;AADG05003176.1/75207-75290 7460:Apis mellifera
(honey bee)
Length = 84
Score = 46.1 bits (23), Expect = 6e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 11 tgaggtagtaggttgtatagtag 33
|||||||||||||||||||||||
Sbjct: 7 tgaggtagtaggttgtatagtag 29
>RF00027;let-7;AAJJ01000960.1/12168-12093 7070:Tribolium castaneum
(red flour beetle)
Length = 76
Score = 46.1 bits (23), Expect = 6e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 10 ttgaggtagtaggttgtatagta 32
|||||||||||||||||||||||
Sbjct: 6 ttgaggtagtaggttgtatagta 28
>RF00027;let-7;ABEG01002465.1/18268-18339 135651:Caenorhabditis
brenneri
Length = 72
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 10 ttgaggtagtaggttgtatagt 31
||||||||||||||||||||||
Sbjct: 5 ttgaggtagtaggttgtatagt 26
>RF00027;let-7;AAGU02067998.1/2847-2772 9785:Loxodonta africana
(African savanna elephant)
Length = 76
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 10 ttgaggtagtaggttgtatagt 31
||||||||||||||||||||||
Sbjct: 6 ttgaggtagtaggttgtatagt 27
>RF00027;let-7;CAAB01004143.1/18701-18777 31033:Takifugu rubripes
Length = 77
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 10 ttgaggtagtaggttgtatagt 31
||||||||||||||||||||||
Sbjct: 6 ttgaggtagtaggttgtatagt 27
>RF00027;let-7;AANH01000597.1/43752-43676 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 77
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 10 ttgaggtagtaggttgtatagt 31
||||||||||||||||||||||
Sbjct: 6 ttgaggtagtaggttgtatagt 27
>RF00027;let-7;BAAE01285721.1/657-581 8090:Oryzias latipes
(Japanese medaka)
Length = 77
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 10 ttgaggtagtaggttgtatagt 31
||||||||||||||||||||||
Sbjct: 6 ttgaggtagtaggttgtatagt 27
