miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>37434_dwi-mir-87-2:mirbase
Length = 93
Score = 176 bits (89), Expect = 2e-45
Identities = 92/93 (98%)
Strand = Plus / Plus
Query: 1 catatttcattcgcgcctgtatcttgctgaaccgttaccaattgtgatcatcatttccgg 60
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 1 catatttcattcgcgcctgtatcttgctgaaccgttaccaattgtgatcttcatttccgg 60
Query: 61 ttgagcaaaatttcaggtgtgtgagaaatttgt 93
|||||||||||||||||||||||||||||||||
Sbjct: 61 ttgagcaaaatttcaggtgtgtgagaaatttgt 93
>36269_dgr-mir-87:mirbase
Length = 92
Score = 123 bits (62), Expect = 2e-29
Identities = 89/94 (94%), Gaps = 3/94 (3%)
Strand = Plus / Plus
Query: 1 catatttcattcgcgcctgtatcttgctgaaccgttaccaattgtgatcatc-atttccg 59
|||||||||||||||||||||||||||||||||||||||| |||||| |||| | ||||
Sbjct: 1 catatttcattcgcgcctgtatcttgctgaaccgttacca-ttgtga-catccaaatccg 58
Query: 60 gttgagcaaaatttcaggtgtgtgagaaatttgt 93
||||||||||||||||||||||||||||||||||
Sbjct: 59 gttgagcaaaatttcaggtgtgtgagaaatttgt 92
>37355_dvi-mir-87:mirbase
Length = 92
Score = 115 bits (58), Expect = 6e-27
Identities = 88/94 (93%), Gaps = 3/94 (3%)
Strand = Plus / Plus
Query: 1 catatttcattcgcgcctgtatcttgctgaaccgttaccaattgtgatcatc-atttccg 59
||||||||||||||||||||||||||||||||||||| |||||| || |||| | ||||
Sbjct: 1 catatttcattcgcgcctgtatcttgctgaaccgtta-caattgaga-catctaaatccg 58
Query: 60 gttgagcaaaatttcaggtgtgtgagaaatttgt 93
||||||||||||||||||||||||||||||||||
Sbjct: 59 gttgagcaaaatttcaggtgtgtgagaaatttgt 92
>37509_dya-mir-87:mirbase
Length = 92
Score = 113 bits (57), Expect = 2e-26
Identities = 86/93 (92%), Gaps = 2/93 (2%)
Strand = Plus / Plus
Query: 1 catatttcattcgcgcctgtatcttgctgaaccgttaccaattgtgatcatcatttccgg 60
||||||||||||||||||||||||||||||||||||| ||||| || || || |||||
Sbjct: 1 catatttcattcgcgcctgtatcttgctgaaccgtta-caattatggtcttc-gatccgg 58
Query: 61 ttgagcaaaatttcaggtgtgtgagaaatttgt 93
|||||||||||||||||||||||||||||||||
Sbjct: 59 ttgagcaaaatttcaggtgtgtgagaaatttgt 91
>36779_dmo-mir-87:mirbase
Length = 92
Score = 107 bits (54), Expect = 1e-24
Identities = 84/90 (93%), Gaps = 3/90 (3%)
Strand = Plus / Plus
Query: 5 tttcattcgcgcctgtatcttgctgaaccgttaccaattgtgatcatc-atttccggttg 63
|||||||||||||||||||||||||||||||||| |||||| | |||| | ||||||||
Sbjct: 5 tttcattcgcgcctgtatcttgctgaaccgttac-aattgtca-catccaaatccggttg 62
Query: 64 agcaaaatttcaggtgtgtgagaaatttgt 93
||||||||||||||||||||||||||||||
Sbjct: 63 agcaaaatttcaggtgtgtgagaaatttgt 92
>36103_dan-mir-87:mirbase
Length = 92
Score = 99.6 bits (50), Expect = 3e-22
Identities = 83/93 (89%), Gaps = 2/93 (2%)
Strand = Plus / Plus
Query: 1 catatttcattcgcgcctgtatcttgctgaaccgttaccaattgtgatcatcatttccgg 60
||||||||||||||||||||||||||||||||||||||| || | || | |||||
Sbjct: 1 catatttcattcgcgcctgtatcttgctgaaccgttaccgatatggcacagaa--tccgg 58
Query: 61 ttgagcaaaatttcaggtgtgtgagaaatttgt 93
|||||||||||||||||||||||||||||||||
Sbjct: 59 ttgagcaaaatttcaggtgtgtgagaaatttgt 91
>36181_der-mir-87:mirbase
Length = 92
Score = 89.7 bits (45), Expect = 3e-19
Identities = 83/93 (89%), Gaps = 2/93 (2%)
Strand = Plus / Plus
Query: 1 catatttcattcgcgcctgtatcttgctgaaccgttaccaattgtgatcatcatttccgg 60
|||||||||||||||||||||||||||||||||||| ||| || || | | | ||||
Sbjct: 1 catatttcattcgcgcctgtatcttgctgaaccgttgcca-ttatggcctacgat-ccgg 58
Query: 61 ttgagcaaaatttcaggtgtgtgagaaatttgt 93
|||||||||||||||||||||||||||||||||
Sbjct: 59 ttgagcaaaatttcaggtgtgtgagaaatttgt 91
>36852_dpe-mir-87:mirbase
Length = 93
Score = 89.7 bits (45), Expect = 3e-19
Identities = 82/93 (88%), Gaps = 1/93 (1%)
Strand = Plus / Plus
Query: 1 catatttcattcgcgcctgtatcttgctgaaccgttaccaattgtgatcatcatttccgg 60
||||||||||||||||||||||||||||||||||| ||| | || || | | ||||
Sbjct: 1 catatttcattcgcgcctgtatcttgctgaaccgtagcca-taatggtctttcatcccgg 59
Query: 61 ttgagcaaaatttcaggtgtgtgagaaatttgt 93
|||||||||||||||||||||||||||||||||
Sbjct: 60 ttgagcaaaatttcaggtgtgtgagaaatttgt 92
>36928_dps-mir-87:mirbase
Length = 98
Score = 89.7 bits (45), Expect = 3e-19
Identities = 82/93 (88%), Gaps = 1/93 (1%)
Strand = Plus / Plus
Query: 1 catatttcattcgcgcctgtatcttgctgaaccgttaccaattgtgatcatcatttccgg 60
||||||||||||||||||||||||||||||||||| ||| | || || | | ||||
Sbjct: 1 catatttcattcgcgcctgtatcttgctgaaccgtagcca-taatggtctttcatcccgg 59
Query: 61 ttgagcaaaatttcaggtgtgtgagaaatttgt 93
|||||||||||||||||||||||||||||||||
Sbjct: 60 ttgagcaaaatttcaggtgtgtgagaaatttgt 92
>36377_dme-mir-87:mirbase
Length = 99
Score = 75.8 bits (38), Expect = 5e-15
Identities = 76/86 (88%), Gaps = 2/86 (2%)
Strand = Plus / Plus
Query: 4 atttcattcgcgcctgtatcttgctgaaccgttaccaattgtgatcatcatttccggttg 63
||||||||||||||||||||||||||||||| | ||| || || || | | |||||||
Sbjct: 6 atttcattcgcgcctgtatcttgctgaaccgctgcca-ttatggccaacgat-ccggttg 63
Query: 64 agcaaaatttcaggtgtgtgagaaat 89
||||||||||||||||||||||||||
Sbjct: 64 agcaaaatttcaggtgtgtgagaaat 89
>36378_dme-mir-87:mirbase
Length = 99
Score = 75.8 bits (38), Expect = 5e-15
Identities = 76/86 (88%), Gaps = 2/86 (2%)
Strand = Plus / Plus
Query: 4 atttcattcgcgcctgtatcttgctgaaccgttaccaattgtgatcatcatttccggttg 63
||||||||||||||||||||||||||||||| | ||| || || || | | |||||||
Sbjct: 6 atttcattcgcgcctgtatcttgctgaaccgctgcca-ttatggccaacgat-ccggttg 63
Query: 64 agcaaaatttcaggtgtgtgagaaat 89
||||||||||||||||||||||||||
Sbjct: 64 agcaaaatttcaggtgtgtgagaaat 89
>37141_dse-mir-87:mirbase
Length = 92
Score = 67.9 bits (34), Expect = 1e-12
Identities = 34/34 (100%)
Strand = Plus / Plus
Query: 56 tccggttgagcaaaatttcaggtgtgtgagaaat 89
||||||||||||||||||||||||||||||||||
Sbjct: 54 tccggttgagcaaaatttcaggtgtgtgagaaat 87
>37216_dsi-mir-87:mirbase
Length = 92
Score = 67.9 bits (34), Expect = 1e-12
Identities = 34/34 (100%)
Strand = Plus / Plus
Query: 56 tccggttgagcaaaatttcaggtgtgtgagaaat 89
||||||||||||||||||||||||||||||||||
Sbjct: 54 tccggttgagcaaaatttcaggtgtgtgagaaat 87
>35361_ame-mir-87-1:mirbase
Length = 100
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 62 tgagcaaaatttcaggtgtgtgag 85
|||||||| |||||||||||||||
Sbjct: 71 tgagcaaagtttcaggtgtgtgag 94
