miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00638;MIR159;ABXC01001787.1/21430-21187 4558:Sorghum bicolor
(sorghum)
Length = 244
Score = 234 bits (118), Expect = 5e-61
Identities = 216/245 (88%), Gaps = 9/245 (3%)
Strand = Plus / Plus
Query: 12 ggatttgaagcggagctcctctcattccaatgaagggtccttccgaagggtggttccgct 71
||||| |||||| ||||||| |||||||||||||||| |||| | |||||||||||||
Sbjct: 1 ggattcgaagcgaagctcctatcattccaatgaagggcccttttcatgggtggttccgct 60
Query: 72 gctcgttcatggttcccactatcctatctcatccatgcttgtgtgtct----tcgagagg 127
||||||||||||||||||||||||||||||||| ||| ||||||| | || |||||
Sbjct: 61 gctcgttcatggttcccactatcctatctcatc-atgtatgtgtgtatgtactctagagg 119
Query: 128 aagcg-gaagagattcctgtggtcgcct---tttgagataggcttgtggtttgcatgacc 183
|| |||||||||| |||||||| | |||||||||||||||||||||||||||||
Sbjct: 120 gcccgagaagagattcatgtggtcgtcagtctttgagataggcttgtggtttgcatgacc 179
Query: 184 gaggagctgcaccgaccccgtgctggccgctctttggattgaagggagctctgcatcctg 243
|||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 180 gaggagctgcaccgtccccttgctggccgctctttggattgaagggagctctgcatcctg 239
Query: 244 atcca 248
|||||
Sbjct: 240 atcca 244
>RF00638;MIR159;EU955086.1/295-527 4577:Zea mays
Length = 233
Score = 170 bits (86), Expect = 6e-42
Identities = 92/94 (97%)
Strand = Plus / Plus
Query: 155 tttgagataggcttgtggtttgcatgaccgaggagctgcaccgaccccgtgctggccgct 214
||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||
Sbjct: 140 tttgagataggcttgtggtttgcatgaccgaggagctgcaccgcccccttgctggccgct 199
Query: 215 ctttggattgaagggagctctgcatcctgatcca 248
||||||||||||||||||||||||||||||||||
Sbjct: 200 ctttggattgaagggagctctgcatcctgatcca 233
Score = 133 bits (67), Expect = 1e-30
Identities = 86/91 (94%), Gaps = 1/91 (1%)
Strand = Plus / Plus
Query: 15 tttgaagcggagctcctctcattccaatgaagggtccttccgaagggt-ggttccgctgc 73
||||||||||||||||| |||||||||||||||||| | |||||||| |||||||||||
Sbjct: 4 tttgaagcggagctcctatcattccaatgaagggtcgtaccgaagggccggttccgctgc 63
Query: 74 tcgttcatggttcccactatcctatctcatc 104
|||||||||||||||||||||||||||||||
Sbjct: 64 tcgttcatggttcccactatcctatctcatc 94
>RF00638;MIR159;EU869041.1/17-203 39947:Oryza sativa Japonica Group
Length = 187
Score = 99.6 bits (50), Expect = 2e-20
Identities = 80/90 (88%)
Strand = Plus / Plus
Query: 158 gagataggcttgtggtttgcatgaccgaggagctgcaccgaccccgtgctggccgctctt 217
|||||||||||||||||||||||||| |||||| | | | || || ||||| || |||||
Sbjct: 97 gagataggcttgtggtttgcatgaccaaggagccgaatcaactccttgctgaccactctt 156
Query: 218 tggattgaagggagctctgcatcctgatcc 247
||||||||||||||||||||||| ||||||
Sbjct: 157 tggattgaagggagctctgcatcttgatcc 186
Score = 56.0 bits (28), Expect = 3e-07
Identities = 43/48 (89%)
Strand = Plus / Plus
Query: 56 gaagggtggttccgctgctcgttcatggttcccactatcctatctcat 103
|||||||| | | |||||| |||||||||||||||||| |||||||||
Sbjct: 42 gaagggtgatacagctgcttgttcatggttcccactattctatctcat 89
>RF00638;MIR159;EU947090.1/674-895 4577:Zea mays
Length = 222
Score = 83.8 bits (42), Expect = 1e-15
Identities = 76/86 (88%), Gaps = 1/86 (1%)
Strand = Plus / Plus
Query: 156 ttgagataggcttgtggtttgcatgaccgaggagctgcaccgaccccgt-gctggccgct 214
||||||| |||||||||||||||||||||||||||||| || |||| | | || |||||
Sbjct: 129 ttgagatgggcttgtggtttgcatgaccgaggagctgcctcgtccccttcgttgaccgct 188
Query: 215 ctttggattgaagggagctctgcatc 240
|||||| ||||||||||||||||||
Sbjct: 189 gtttggagtgaagggagctctgcatc 214
Score = 60.0 bits (30), Expect = 2e-08
Identities = 42/46 (91%)
Strand = Plus / Plus
Query: 59 gggtggttccgctgctcgttcatggttcccactatcctatctcatc 104
||||||| | ||||||||||||||||||||||| ||| ||||||||
Sbjct: 48 gggtggtacagctgctcgttcatggttcccactgtcccatctcatc 93
>RF00638;MIR159;ABXC01001787.1/15180-14953 4558:Sorghum bicolor
(sorghum)
Length = 228
Score = 77.8 bits (39), Expect = 7e-14
Identities = 73/83 (87%), Gaps = 1/83 (1%)
Strand = Plus / Plus
Query: 156 ttgagataggcttgtggtttgcatgaccgaggagctgcaccgacccc-gtgctggccgct 214
||||||| ||| ||||||||||||||||||||||||||| || |||| || | |||||
Sbjct: 135 ttgagatgggcctgtggtttgcatgaccgaggagctgcatcgtcccctttgtcgaccgct 194
Query: 215 ctttggattgaagggagctctgc 237
| |||||||||||||||||||||
Sbjct: 195 cgttggattgaagggagctctgc 217
Score = 63.9 bits (32), Expect = 1e-09
Identities = 35/36 (97%)
Strand = Plus / Plus
Query: 69 gctgctcgttcatggttcccactatcctatctcatc 104
||||||||||||||||||||||||||| ||||||||
Sbjct: 58 gctgctcgttcatggttcccactatcccatctcatc 93
>RF00638;MIR159;AP008207.1/17678032-17678305 39947:Oryza sativa
Japonica Group
Length = 274
Score = 56.0 bits (28), Expect = 3e-07
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 213 ctctttggattgaagggagctctgcatc 240
||||||||||||||||||||||||||||
Sbjct: 239 ctctttggattgaagggagctctgcatc 266
>RF00638;MIR159;AC034107.5/26716-26923 3702:Arabidopsis thaliana
(thale cress)
Length = 208
Score = 46.1 bits (23), Expect = 2e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 214 tctttggattgaagggagctctgcatc 240
|||||||||||||||||||||| ||||
Sbjct: 174 tctttggattgaagggagctcttcatc 200
>RF00638;MIR159;EU548541.1/320-117 3702:Arabidopsis thaliana (thale
cress)
Length = 204
Score = 46.1 bits (23), Expect = 2e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 214 tctttggattgaagggagctctgcatc 240
|||||||||||||||||||||| ||||
Sbjct: 170 tctttggattgaagggagctctacatc 196
