miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>37123_dse-mir-6-3:mirbase
Length = 80
Score = 143 bits (72), Expect = 2e-35
Identities = 78/80 (97%)
Strand = Plus / Plus
Query: 1 caaaaagaagggaacggttgctgatgatgtagttcgaaactctctcaatttatatcacag 60
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 1 caaaaagaagggaacggttgctgatgatgtagttcgaaactctcacaatttatatcacag 60
Query: 61 tggctgttcttttttatttg 80
||||||||||||||| ||||
Sbjct: 61 tggctgttcttttttgtttg 80
>37201_dsi-mir-6-3:mirbase
Length = 80
Score = 143 bits (72), Expect = 2e-35
Identities = 78/80 (97%)
Strand = Plus / Plus
Query: 1 caaaaagaagggaacggttgctgatgatgtagttcgaaactctctcaatttatatcacag 60
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 1 caaaaagaagggaacggttgctgatgatgtagttcgaaactctcacaatttatatcacag 60
Query: 61 tggctgttcttttttatttg 80
||||||||||||||| ||||
Sbjct: 61 tggctgttcttttttgtttg 80
>36163_der-mir-6-3:mirbase
Length = 80
Score = 135 bits (68), Expect = 5e-33
Identities = 77/80 (96%)
Strand = Plus / Plus
Query: 1 caaaaagaagggaacggttgctgatgatgtagttcgaaactctctcaatttatatcacag 60
|||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||
Sbjct: 1 caaaaagaagggaacggtggctgatgatgtagttcgaaactctcacaatttatatcacag 60
Query: 61 tggctgttcttttttatttg 80
||||||||||||||| ||||
Sbjct: 61 tggctgttcttttttgtttg 80
>36341_dme-mir-6-3:mirbase
Length = 80
Score = 135 bits (68), Expect = 5e-33
Identities = 77/80 (96%)
Strand = Plus / Plus
Query: 1 caaaaagaagggaacggttgctgatgatgtagttcgaaactctctcaatttatatcacag 60
|||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||
Sbjct: 1 caaaaagaagggaacggttgctgatgatgtagtttgaaactctcacaatttatatcacag 60
Query: 61 tggctgttcttttttatttg 80
||||||||||||||| ||||
Sbjct: 61 tggctgttcttttttgtttg 80
>36342_dme-mir-6-3:mirbase
Length = 80
Score = 135 bits (68), Expect = 5e-33
Identities = 77/80 (96%)
Strand = Plus / Plus
Query: 1 caaaaagaagggaacggttgctgatgatgtagttcgaaactctctcaatttatatcacag 60
|||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||
Sbjct: 1 caaaaagaagggaacggttgctgatgatgtagtttgaaactctcacaatttatatcacag 60
Query: 61 tggctgttcttttttatttg 80
||||||||||||||| ||||
Sbjct: 61 tggctgttcttttttgtttg 80
>36833_dpe-mir-6-2:mirbase
Length = 80
Score = 95.6 bits (48), Expect = 4e-21
Identities = 72/80 (90%)
Strand = Plus / Plus
Query: 1 caaaaagaagggaacggttgctgatgatgtagttcgaaactctctcaatttatatcacag 60
||||||||||||||||||||||| ||||||||||| | || | |||||||||||||||
Sbjct: 1 caaaaagaagggaacggttgctgctgatgtagttcaagtttcgcacaatttatatcacag 60
Query: 61 tggctgttcttttttatttg 80
||||||||||||||| ||||
Sbjct: 61 tggctgttcttttttgtttg 80
>36910_dps-mir-6-3:mirbase
Length = 80
Score = 87.7 bits (44), Expect = 1e-18
Identities = 71/80 (88%)
Strand = Plus / Plus
Query: 1 caaaaagaagggaacggttgctgatgatgtagttcgaaactctctcaatttatatcacag 60
||||||||||||||||||||||| ||||||||||| | | | |||||||||||||||
Sbjct: 1 caaaaagaagggaacggttgctgctgatgtagttcaagttttgcacaatttatatcacag 60
Query: 61 tggctgttcttttttatttg 80
||||||||||||||| ||||
Sbjct: 61 tggctgttcttttttgtttg 80
>36085_dan-mir-6-3:mirbase
Length = 76
Score = 61.9 bits (31), Expect = 6e-11
Identities = 68/80 (85%), Gaps = 4/80 (5%)
Strand = Plus / Plus
Query: 1 caaaaagaagggaacggttgctgatgatgtagttcgaaactctctcaatttatatcacag 60
|||||||||||||||||| |||| |||||||||| | || | |||||||||||||
Sbjct: 1 caaaaagaagggaacggtcgctgctgatgtagtt----attcgcatcatttatatcacag 56
Query: 61 tggctgttcttttttatttg 80
||||||||||||||| ||||
Sbjct: 57 tggctgttcttttttgtttg 76
>36248_dgr-mir-6-3:mirbase
Length = 74
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 49 tttatatcacagtggctgttctttttt 75
|||||||||||||||||||||||||||
Sbjct: 46 tttatatcacagtggctgttctttttt 72
>36251_dgr-mir-6-6:mirbase
Length = 74
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 49 tttatatcacagtggctgttctttttt 75
|||||||||||||||||||||||||||
Sbjct: 46 tttatatcacagtggctgttctttttt 72
>36759_dmo-mir-6-1:mirbase
Length = 66
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 48 atttatatcacagtggctgttcttttt 74
|||||||||||||||||||||||||||
Sbjct: 37 atttatatcacagtggctgttcttttt 63
>36761_dmo-mir-6-3:mirbase
Length = 78
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 49 tttatatcacagtggctgttctttttt 75
|||||||||||||||||||||||||||
Sbjct: 48 tttatatcacagtggctgttctttttt 74
>37337_dvi-mir-6-3:mirbase
Length = 73
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 49 tttatatcacagtggctgttctttttt 75
|||||||||||||||||||||||||||
Sbjct: 45 tttatatcacagtggctgttctttttt 71
>37412_dwi-mir-6-3:mirbase
Length = 76
Score = 52.0 bits (26), Expect = 6e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 4 aaagaagggaacggttgctgatgatgtagt 33
|||||||||||||||||||| |||||||||
Sbjct: 1 aaagaagggaacggttgctgttgatgtagt 30
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 51 tatatcacagtggctgttctttttt 75
|||||||||||||||||||||||||
Sbjct: 50 tatatcacagtggctgttctttttt 74
>36083_dan-mir-6-1:mirbase
Length = 68
Score = 48.1 bits (24), Expect = 9e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 51 tatatcacagtggctgttcttttt 74
||||||||||||||||||||||||
Sbjct: 41 tatatcacagtggctgttcttttt 64
>36084_dan-mir-6-2:mirbase
Length = 84
Score = 48.1 bits (24), Expect = 9e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 51 tatatcacagtggctgttcttttt 74
||||||||||||||||||||||||
Sbjct: 56 tatatcacagtggctgttcttttt 79
>36161_der-mir-6-1:mirbase
Length = 71
Score = 48.1 bits (24), Expect = 9e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 51 tatatcacagtggctgttcttttt 74
||||||||||||||||||||||||
Sbjct: 45 tatatcacagtggctgttcttttt 68
>36162_der-mir-6-2:mirbase
Length = 73
Score = 48.1 bits (24), Expect = 9e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 51 tatatcacagtggctgttcttttt 74
||||||||||||||||||||||||
Sbjct: 45 tatatcacagtggctgttcttttt 68
>36246_dgr-mir-6-1:mirbase
Length = 70
Score = 48.1 bits (24), Expect = 9e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 51 tatatcacagtggctgttcttttt 74
||||||||||||||||||||||||
Sbjct: 44 tatatcacagtggctgttcttttt 67
>36247_dgr-mir-6-2:mirbase
Length = 79
Score = 48.1 bits (24), Expect = 9e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 51 tatatcacagtggctgttcttttt 74
||||||||||||||||||||||||
Sbjct: 51 tatatcacagtggctgttcttttt 74
>36249_dgr-mir-6-4:mirbase
Length = 70
Score = 48.1 bits (24), Expect = 9e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 51 tatatcacagtggctgttcttttt 74
||||||||||||||||||||||||
Sbjct: 44 tatatcacagtggctgttcttttt 67
>36250_dgr-mir-6-5:mirbase
Length = 79
Score = 48.1 bits (24), Expect = 9e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 51 tatatcacagtggctgttcttttt 74
||||||||||||||||||||||||
Sbjct: 51 tatatcacagtggctgttcttttt 74
>36337_dme-mir-6-1:mirbase
Length = 82
Score = 48.1 bits (24), Expect = 9e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 51 tatatcacagtggctgttcttttt 74
||||||||||||||||||||||||
Sbjct: 50 tatatcacagtggctgttcttttt 73
>36338_dme-mir-6-1:mirbase
Length = 82
Score = 48.1 bits (24), Expect = 9e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 51 tatatcacagtggctgttcttttt 74
||||||||||||||||||||||||
Sbjct: 50 tatatcacagtggctgttcttttt 73
>36339_dme-mir-6-2:mirbase
Length = 74
Score = 48.1 bits (24), Expect = 9e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 51 tatatcacagtggctgttcttttt 74
||||||||||||||||||||||||
Sbjct: 46 tatatcacagtggctgttcttttt 69
>36340_dme-mir-6-2:mirbase
Length = 74
Score = 48.1 bits (24), Expect = 9e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 51 tatatcacagtggctgttcttttt 74
||||||||||||||||||||||||
Sbjct: 46 tatatcacagtggctgttcttttt 69
>36760_dmo-mir-6-2:mirbase
Length = 81
Score = 48.1 bits (24), Expect = 9e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 51 tatatcacagtggctgttcttttt 74
||||||||||||||||||||||||
Sbjct: 53 tatatcacagtggctgttcttttt 76
>36832_dpe-mir-6-1:mirbase
Length = 69
Score = 48.1 bits (24), Expect = 9e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 51 tatatcacagtggctgttcttttt 74
||||||||||||||||||||||||
Sbjct: 43 tatatcacagtggctgttcttttt 66
>36834_dpe-mir-6-3:mirbase
Length = 83
Score = 48.1 bits (24), Expect = 9e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 51 tatatcacagtggctgttcttttt 74
||||||||||||||||||||||||
Sbjct: 56 tatatcacagtggctgttcttttt 79
>36908_dps-mir-6-1:mirbase
Length = 80
Score = 48.1 bits (24), Expect = 9e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 51 tatatcacagtggctgttcttttt 74
||||||||||||||||||||||||
Sbjct: 48 tatatcacagtggctgttcttttt 71
>36909_dps-mir-6-2:mirbase
Length = 83
Score = 48.1 bits (24), Expect = 9e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 51 tatatcacagtggctgttcttttt 74
||||||||||||||||||||||||
Sbjct: 56 tatatcacagtggctgttcttttt 79
>37121_dse-mir-6-1:mirbase
Length = 71
Score = 48.1 bits (24), Expect = 9e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 51 tatatcacagtggctgttcttttt 74
||||||||||||||||||||||||
Sbjct: 45 tatatcacagtggctgttcttttt 68
>37122_dse-mir-6-2:mirbase
Length = 74
Score = 48.1 bits (24), Expect = 9e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 51 tatatcacagtggctgttcttttt 74
||||||||||||||||||||||||
Sbjct: 46 tatatcacagtggctgttcttttt 69
>37199_dsi-mir-6-1:mirbase
Length = 71
Score = 48.1 bits (24), Expect = 9e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 51 tatatcacagtggctgttcttttt 74
||||||||||||||||||||||||
Sbjct: 45 tatatcacagtggctgttcttttt 68
>37200_dsi-mir-6-2:mirbase
Length = 74
Score = 48.1 bits (24), Expect = 9e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 51 tatatcacagtggctgttcttttt 74
||||||||||||||||||||||||
Sbjct: 46 tatatcacagtggctgttcttttt 69
>37335_dvi-mir-6-1:mirbase
Length = 70
Score = 48.1 bits (24), Expect = 9e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 51 tatatcacagtggctgttcttttt 74
||||||||||||||||||||||||
Sbjct: 44 tatatcacagtggctgttcttttt 67
>37411_dwi-mir-6-2:mirbase
Length = 94
Score = 48.1 bits (24), Expect = 9e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 51 tatatcacagtggctgttcttttt 74
||||||||||||||||||||||||
Sbjct: 67 tatatcacagtggctgttcttttt 90
>37489_dya-mir-6-1:mirbase
Length = 71
Score = 48.1 bits (24), Expect = 9e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 51 tatatcacagtggctgttcttttt 74
||||||||||||||||||||||||
Sbjct: 45 tatatcacagtggctgttcttttt 68
>37490_dya-mir-6-2:mirbase
Length = 74
Score = 48.1 bits (24), Expect = 9e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 51 tatatcacagtggctgttcttttt 74
||||||||||||||||||||||||
Sbjct: 46 tatatcacagtggctgttcttttt 69
>37336_dvi-mir-6-2:mirbase
Length = 80
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 52 atatcacagtggctgttcttttt 74
|||||||||||||||||||||||
Sbjct: 53 atatcacagtggctgttcttttt 75
>37410_dwi-mir-6-1:mirbase
Length = 69
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 52 atatcacagtggctgttcttttt 74
|||||||||||||||||||||||
Sbjct: 44 atatcacagtggctgttcttttt 66
