miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>36167_der-mir-9b:mirbase
Length = 89
Score = 151 bits (76), Expect = 1e-37
Identities = 88/91 (96%), Gaps = 2/91 (2%)
Strand = Plus / Plus
Query: 1 tgcatattatttgctctttggtgattttagctgtatggtgtgtttatgtgttccatagag 60
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 1 tgcatattatttgctctttggtgattttagctgtatggtgtgt--atgtgttccatagag 58
Query: 61 ctttattaccaaaaaccaaatggtttctgca 91
|||||||||||||||||||||||||| ||||
Sbjct: 59 ctttattaccaaaaaccaaatggtttttgca 89
>36349_dme-mir-9b:mirbase
Length = 91
Score = 141 bits (71), Expect = 1e-34
Identities = 86/91 (94%)
Strand = Plus / Plus
Query: 1 tgcatattatttgctctttggtgattttagctgtatggtgtgtttatgtgttccatagag 60
||||||||||||||||||||||||||||||||||||||||| | | | | ||||||||||
Sbjct: 1 tgcatattatttgctctttggtgattttagctgtatggtgtttatgtatattccatagag 60
Query: 61 ctttattaccaaaaaccaaatggtttctgca 91
|||||||||||||||||||||||||||||||
Sbjct: 61 ctttattaccaaaaaccaaatggtttctgca 91
>36350_dme-mir-9b:mirbase
Length = 91
Score = 141 bits (71), Expect = 1e-34
Identities = 86/91 (94%)
Strand = Plus / Plus
Query: 1 tgcatattatttgctctttggtgattttagctgtatggtgtgtttatgtgttccatagag 60
||||||||||||||||||||||||||||||||||||||||| | | | | ||||||||||
Sbjct: 1 tgcatattatttgctctttggtgattttagctgtatggtgtttatgtatattccatagag 60
Query: 61 ctttattaccaaaaaccaaatggtttctgca 91
|||||||||||||||||||||||||||||||
Sbjct: 61 ctttattaccaaaaaccaaatggtttctgca 91
>37127_dse-mir-9b:mirbase
Length = 89
Score = 127 bits (64), Expect = 1e-30
Identities = 85/91 (93%), Gaps = 2/91 (2%)
Strand = Plus / Plus
Query: 1 tgcatattatttgctctttggtgattttagctgtatggtgtgtttatgtgttccatagag 60
||||||||||||| ||||||||||||||||||||||||||| | | || ||||||||||
Sbjct: 1 tgcatattatttggtctttggtgattttagctgtatggtgtat--aagtattccatagag 58
Query: 61 ctttattaccaaaaaccaaatggtttctgca 91
|||||||||||||||||||||||||||||||
Sbjct: 59 ctttattaccaaaaaccaaatggtttctgca 89
>37341_dvi-mir-9b:mirbase
Length = 89
Score = 119 bits (60), Expect = 4e-28
Identities = 84/91 (92%), Gaps = 2/91 (2%)
Strand = Plus / Plus
Query: 1 tgcatattatttgctctttggtgattttagctgtatggtgtgtttatgtgttccatagag 60
|||||||||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct: 1 tgcatattatttgctctttggtgattttagctgtatggtgtg--cgcgtattccatagag 58
Query: 61 ctttattaccaaaaaccaaatggtttctgca 91
|||||||||||||||||||||||||| ||||
Sbjct: 59 ctttattaccaaaaaccaaatggtttttgca 89
>36765_dmo-mir-9b:mirbase
Length = 89
Score = 105 bits (53), Expect = 5e-24
Identities = 77/84 (91%), Gaps = 2/84 (2%)
Strand = Plus / Plus
Query: 1 tgcatattatttgctctttggtgattttagctgtatggtgtgtttatgtgttccatagag 60
||||||||||||| |||||||||||||||||||||||||||| || ||||||||||
Sbjct: 1 tgcatattatttgttctttggtgattttagctgtatggtgtg--cgcgtattccatagag 58
Query: 61 ctttattaccaaaaaccaaatggt 84
||||||||||||||||||||||||
Sbjct: 59 ctttattaccaaaaaccaaatggt 82
>37416_dwi-mir-9b-1:mirbase
Length = 90
Score = 99.6 bits (50), Expect = 3e-22
Identities = 80/90 (88%)
Strand = Plus / Plus
Query: 2 gcatattatttgctctttggtgattttagctgtatggtgtgtttatgtgttccatagagc 61
|||||||||||| ||||||||||||||||||||||||||| | | ||||||||||
Sbjct: 1 gcatattatttggtctttggtgattttagctgtatggtgtatgagcataatccatagagc 60
Query: 62 tttattaccaaaaaccaaatggtttctgca 91
||||||||||||||||||||||||| ||||
Sbjct: 61 tttattaccaaaaaccaaatggtttttgca 90
>37417_dwi-mir-9b-2:mirbase
Length = 90
Score = 99.6 bits (50), Expect = 3e-22
Identities = 80/90 (88%)
Strand = Plus / Plus
Query: 2 gcatattatttgctctttggtgattttagctgtatggtgtgtttatgtgttccatagagc 61
|||||||||||| ||||||||||||||||||||||||||| | | ||||||||||
Sbjct: 1 gcatattatttggtctttggtgattttagctgtatggtgtatgagcataatccatagagc 60
Query: 62 tttattaccaaaaaccaaatggtttctgca 91
||||||||||||||||||||||||| ||||
Sbjct: 61 tttattaccaaaaaccaaatggtttttgca 90
>36089_dan-mir-9b:mirbase
Length = 88
Score = 97.6 bits (49), Expect = 1e-21
Identities = 81/91 (89%), Gaps = 3/91 (3%)
Strand = Plus / Plus
Query: 1 tgcatattatttgctctttggtgattttagctgtatggtgtgtttatgtgttccatagag 60
|||| |||||||| ||||||||||||||||||||||||||| | | ||||||||||
Sbjct: 1 tgcacattatttgttctttggtgattttagctgtatggtgtctca---tattccatagag 57
Query: 61 ctttattaccaaaaaccaaatggtttctgca 91
|||||||||||||||||||||||||| ||||
Sbjct: 58 ctttattaccaaaaaccaaatggtttttgca 88
>36255_dgr-mir-9b:mirbase
Length = 89
Score = 95.6 bits (48), Expect = 5e-21
Identities = 81/91 (89%), Gaps = 2/91 (2%)
Strand = Plus / Plus
Query: 1 tgcatattatttgctctttggtgattttagctgtatggtgtgtttatgtgttccatagag 60
|||||||||||||||||||||||||||||||| ||||||||| | | |||| ||||
Sbjct: 1 tgcatattatttgctctttggtgattttagctctatggtgtgcgca--taatccacagag 58
Query: 61 ctttattaccaaaaaccaaatggtttctgca 91
|||||||||||||||||||||||||| ||||
Sbjct: 59 ctttattaccaaaaaccaaatggtttttgca 89
>36838_dpe-mir-9b:mirbase
Length = 91
Score = 85.7 bits (43), Expect = 5e-18
Identities = 79/91 (86%)
Strand = Plus / Plus
Query: 1 tgcatattatttgctctttggtgattttagctgtatggtgtgtttatgtgttccatagag 60
|||| |||||||| ||||||||||||||||||||||||||| | | | |||||||||
Sbjct: 1 tgcacattatttgatctttggtgattttagctgtatggtgtatatcaaagatccatagag 60
Query: 61 ctttattaccaaaaaccaaatggtttctgca 91
|||||| ||||||| ||||||||||| ||||
Sbjct: 61 ctttatcaccaaaacccaaatggtttttgca 91
>36914_dps-mir-9b:mirbase
Length = 91
Score = 85.7 bits (43), Expect = 5e-18
Identities = 79/91 (86%)
Strand = Plus / Plus
Query: 1 tgcatattatttgctctttggtgattttagctgtatggtgtgtttatgtgttccatagag 60
|||| |||||||| ||||||||||||||||||||||||||| | | | |||||||||
Sbjct: 1 tgcacattatttgatctttggtgattttagctgtatggtgtatatcaaagatccatagag 60
Query: 61 ctttattaccaaaaaccaaatggtttctgca 91
|||||| ||||||| ||||||||||| ||||
Sbjct: 61 ctttatcaccaaaacccaaatggtttttgca 91
>35174_aae-mir-9b:mirbase
Length = 92
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 15 tctttggtgattttagctgtatg 37
|||||||||||||||||||||||
Sbjct: 15 tctttggtgattttagctgtatg 37
>35276_aga-mir-9b:mirbase
Length = 93
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 16 ctttggtgattttagctgtatg 37
||||||||||||||||||||||
Sbjct: 16 ctttggtgattttagctgtatg 37
