miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00813;mir-11;AASR01031502.1/45-1 7240:Drosophila simulans
Length = 45
Score = 81.8 bits (41), Expect = 1e-15
Identities = 44/45 (97%)
Strand = Plus / Plus
Query: 16 tttctctgtgacctgcgtgtacttaaaagccgcatcacagtctga 60
||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 1 tttctctgtgacccgcgtgtacttaaaagccgcatcacagtctga 45
>RF00813;mir-11;AAFS01000036.1/6151-6079 46245:Drosophila
pseudoobscura pseudoobscura
Length = 73
Score = 63.9 bits (32), Expect = 3e-10
Identities = 62/71 (87%), Gaps = 2/71 (2%)
Strand = Plus / Plus
Query: 4 cttgtcaagaactttctctgtgacctgcgtgtacttaaaagccgcatcacagtctgagtt 63
|||||||||||||| ||||||||||||||| || | ||| ||||||||||||||||
Sbjct: 4 cttgtcaagaacttattctgtgacctgcgtgacattta--gccacatcacagtctgagtt 61
Query: 64 cttgctgagcg 74
|||||||||||
Sbjct: 62 cttgctgagcg 72
>RF00813;mir-11;AAQB01008624.1/142840-142924 7260:Drosophila
willistoni
Length = 85
Score = 60.0 bits (30), Expect = 4e-09
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 45 ccgcatcacagtctgagttcttgctgagcg 74
||||||||||||||||||||||||||||||
Sbjct: 55 ccgcatcacagtctgagttcttgctgagcg 84
Score = 46.1 bits (23), Expect = 6e-05
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 4 cttgtcaagaactttctctgtgacctgcgtg 34
|||||||||| || |||||||||||||||||
Sbjct: 4 cttgtcaagatctctctctgtgacctgcgtg 34
>RF00813;mir-11;AAPT01019388.1/147488-147568 7222:Drosophila
grimshawi
Length = 81
Score = 60.0 bits (30), Expect = 4e-09
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 46 cgcatcacagtctgagttcttgctgagcgc 75
||||||||||||||||||||||||||||||
Sbjct: 52 cgcatcacagtctgagttcttgctgagcgc 81
>RF00813;mir-11;AANI01017139.1/215647-215727 7244:Drosophila
virilis
Length = 81
Score = 54.0 bits (27), Expect = 2e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 45 ccgcatcacagtctgagttcttgctgagcgc 75
||||||||||||||||||||||||| |||||
Sbjct: 51 ccgcatcacagtctgagttcttgcttagcgc 81
>RF00813;mir-11;AAPU01010953.1/16155-16075 7230:Drosophila
mojavensis
Length = 81
Score = 54.0 bits (27), Expect = 2e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 45 ccgcatcacagtctgagttcttgctgagcgc 75
||||||||||||||||||||||||| |||||
Sbjct: 51 ccgcatcacagtctgagttcttgcttagcgc 81
Score = 44.1 bits (22), Expect = 2e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 9 caagaactttctctgtgacctgcgtg 34
|||||||||| |||||||||||||||
Sbjct: 9 caagaactttttctgtgacctgcgtg 34
>RF00813;mir-11;AAPP01019528.1/447265-447343 7217:Drosophila
ananassae
Length = 79
Score = 50.1 bits (25), Expect = 4e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 48 catcacagtctgagttcttgctgag 72
|||||||||||||||||||||||||
Sbjct: 52 catcacagtctgagttcttgctgag 76
>RF00813;mir-11;AAWU01011517.1/5912-5834 7176:Culex
quinquefasciatus (southern house mosquito)
Length = 79
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 48 catcacagtctgagttcttgct 69
||||||||||||||||||||||
Sbjct: 52 catcacagtctgagttcttgct 73
>RF00813;mir-11;AAGE02023911.1/46406-46483 7159:Aedes aegypti
(yellow fever mosquito)
Length = 78
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 48 catcacagtctgagttcttgct 69
||||||||||||||||||||||
Sbjct: 51 catcacagtctgagttcttgct 72
>RF00813;mir-11;ABKP02017914.1/853-942 377271:Anopheles gambiae M
Length = 90
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 48 catcacagtctgagttcttgct 69
||||||||||||||||||||||
Sbjct: 63 catcacagtctgagttcttgct 84
