miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>36363_dme-mir-13b-2:mirbase
Length = 70
Score = 133 bits (67), Expect = 2e-32
Identities = 67/67 (100%)
Strand = Plus / Plus
Query: 2 taacgcgtcaaaatgactgtgagctatgtggatttgacttcatatcacagccattttgac 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4 taacgcgtcaaaatgactgtgagctatgtggatttgacttcatatcacagccattttgac 63
Query: 62 gagtttg 68
|||||||
Sbjct: 64 gagtttg 70
>36364_dme-mir-13b-2:mirbase
Length = 70
Score = 133 bits (67), Expect = 2e-32
Identities = 67/67 (100%)
Strand = Plus / Plus
Query: 2 taacgcgtcaaaatgactgtgagctatgtggatttgacttcatatcacagccattttgac 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4 taacgcgtcaaaatgactgtgagctatgtggatttgacttcatatcacagccattttgac 63
Query: 62 gagtttg 68
|||||||
Sbjct: 64 gagtttg 70
>37134_dse-mir-13b-2:mirbase
Length = 68
Score = 131 bits (66), Expect = 7e-32
Identities = 66/66 (100%)
Strand = Plus / Plus
Query: 3 aacgcgtcaaaatgactgtgagctatgtggatttgacttcatatcacagccattttgacg 62
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3 aacgcgtcaaaatgactgtgagctatgtggatttgacttcatatcacagccattttgacg 62
Query: 63 agtttg 68
||||||
Sbjct: 63 agtttg 68
>37210_dsi-mir-13b-2:mirbase
Length = 68
Score = 131 bits (66), Expect = 7e-32
Identities = 66/66 (100%)
Strand = Plus / Plus
Query: 3 aacgcgtcaaaatgactgtgagctatgtggatttgacttcatatcacagccattttgacg 62
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3 aacgcgtcaaaatgactgtgagctatgtggatttgacttcatatcacagccattttgacg 62
Query: 63 agtttg 68
||||||
Sbjct: 63 agtttg 68
>36174_der-mir-13b-2:mirbase
Length = 68
Score = 111 bits (56), Expect = 6e-26
Identities = 62/64 (96%)
Strand = Plus / Plus
Query: 5 cgcgtcaaaatgactgtgagctatgtggatttgacttcatatcacagccattttgacgag 64
||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 5 cgcgtcaaagtgactgtgaactatgtggatttgacttcatatcacagccattttgacgag 64
Query: 65 tttg 68
||||
Sbjct: 65 tttg 68
>36921_dps-mir-13b-2:mirbase
Length = 69
Score = 97.6 bits (49), Expect = 9e-22
Identities = 61/65 (93%)
Strand = Plus / Plus
Query: 4 acgcgtcaaaatgactgtgagctatgtggatttgacttcatatcacagccattttgacga 63
|||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct: 5 acgcgtcaaaatgactgtgagctatgtgtttttgatctcatatcacagccattttgacga 64
Query: 64 gtttg 68
|||||
Sbjct: 65 gtttg 69
>36845_dpe-mir-13b-2:mirbase
Length = 66
Score = 95.6 bits (48), Expect = 4e-21
Identities = 60/64 (93%)
Strand = Plus / Plus
Query: 4 acgcgtcaaaatgactgtgagctatgtggatttgacttcatatcacagccattttgacga 63
|||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct: 3 acgcgtcaaaatgactgtgagctatgtgtttttgatctcatatcacagccattttgacga 62
Query: 64 gttt 67
||||
Sbjct: 63 gttt 66
>36096_dan-mir-13b-2:mirbase
Length = 66
Score = 71.9 bits (36), Expect = 5e-14
Identities = 57/64 (89%)
Strand = Plus / Plus
Query: 5 cgcgtcaaaatgactgtgagctatgtggatttgacttcatatcacagccattttgacgag 64
|||||| |||||||||||| |||| | |||||| ||||||||||||||||||||||||
Sbjct: 3 cgcgtcgaaatgactgtgacttatgcgtatttgatgtcatatcacagccattttgacgag 62
Query: 65 tttg 68
||||
Sbjct: 63 tttg 66
>37348_dvi-mir-13b-2:mirbase
Length = 73
Score = 71.9 bits (36), Expect = 5e-14
Identities = 62/69 (89%), Gaps = 5/69 (7%)
Strand = Plus / Plus
Query: 5 cgcgtcaaaatgactgtgagctatgtgg----atttgac-ttcatatcacagccattttg 59
|||||||||||||||||||||||||| | ||||| | ||||||||||||||||||||
Sbjct: 5 cgcgtcaaaatgactgtgagctatgttgttgcatttgccattcatatcacagccattttg 64
Query: 60 acgagtttg 68
|||||||||
Sbjct: 65 acgagtttg 73
>36772_dmo-mir-13b-2:mirbase
Length = 67
Score = 63.9 bits (32), Expect = 1e-11
Identities = 57/64 (89%), Gaps = 1/64 (1%)
Strand = Plus / Plus
Query: 5 cgcgtcaaaatgactgtgagctatgtggatttgact-tcatatcacagccattttgacga 63
||||||||| |||||||||||||||| || || | |||||||||||||||||||||||
Sbjct: 4 cgcgtcaaattgactgtgagctatgtttatgagattatcatatcacagccattttgacga 63
Query: 64 gttt 67
||||
Sbjct: 64 gttt 67
>35281_aga-mir-13b:mirbase
Length = 94
Score = 58.0 bits (29), Expect = 8e-10
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 40 ttcatatcacagccattttgacgagtttg 68
|||||||||||||||||||||||||||||
Sbjct: 52 ttcatatcacagccattttgacgagtttg 80
>36011_cqu-mir-13:mirbase
Length = 82
Score = 58.0 bits (29), Expect = 8e-10
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 40 ttcatatcacagccattttgacgagtttg 68
|||||||||||||||||||||||||||||
Sbjct: 51 ttcatatcacagccattttgacgagtttg 79
>36262_dgr-mir-13b-2:mirbase
Length = 73
Score = 58.0 bits (29), Expect = 8e-10
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 40 ttcatatcacagccattttgacgagtttg 68
|||||||||||||||||||||||||||||
Sbjct: 45 ttcatatcacagccattttgacgagtttg 73
>37424_dwi-mir-13b-1:mirbase
Length = 71
Score = 58.0 bits (29), Expect = 8e-10
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 40 ttcatatcacagccattttgacgagtttg 68
|||||||||||||||||||||||||||||
Sbjct: 42 ttcatatcacagccattttgacgagtttg 70
>36095_dan-mir-13b-1:mirbase
Length = 69
Score = 56.0 bits (28), Expect = 3e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 41 tcatatcacagccattttgacgagtttg 68
||||||||||||||||||||||||||||
Sbjct: 41 tcatatcacagccattttgacgagtttg 68
>36173_der-mir-13b-1:mirbase
Length = 68
Score = 56.0 bits (28), Expect = 3e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 41 tcatatcacagccattttgacgagtttg 68
||||||||||||||||||||||||||||
Sbjct: 40 tcatatcacagccattttgacgagtttg 67
>36261_dgr-mir-13b-1:mirbase
Length = 68
Score = 56.0 bits (28), Expect = 3e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 41 tcatatcacagccattttgacgagtttg 68
||||||||||||||||||||||||||||
Sbjct: 40 tcatatcacagccattttgacgagtttg 67
>36361_dme-mir-13b-1:mirbase
Length = 68
Score = 56.0 bits (28), Expect = 3e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 41 tcatatcacagccattttgacgagtttg 68
||||||||||||||||||||||||||||
Sbjct: 40 tcatatcacagccattttgacgagtttg 67
>36362_dme-mir-13b-1:mirbase
Length = 68
Score = 56.0 bits (28), Expect = 3e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 41 tcatatcacagccattttgacgagtttg 68
||||||||||||||||||||||||||||
Sbjct: 40 tcatatcacagccattttgacgagtttg 67
>36771_dmo-mir-13b-1:mirbase
Length = 68
Score = 56.0 bits (28), Expect = 3e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 41 tcatatcacagccattttgacgagtttg 68
||||||||||||||||||||||||||||
Sbjct: 40 tcatatcacagccattttgacgagtttg 67
>36844_dpe-mir-13b-1:mirbase
Length = 69
Score = 56.0 bits (28), Expect = 3e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 41 tcatatcacagccattttgacgagtttg 68
||||||||||||||||||||||||||||
Sbjct: 41 tcatatcacagccattttgacgagtttg 68
>36920_dps-mir-13b-1:mirbase
Length = 69
Score = 56.0 bits (28), Expect = 3e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 41 tcatatcacagccattttgacgagtttg 68
||||||||||||||||||||||||||||
Sbjct: 41 tcatatcacagccattttgacgagtttg 68
>37133_dse-mir-13b-1:mirbase
Length = 68
Score = 56.0 bits (28), Expect = 3e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 41 tcatatcacagccattttgacgagtttg 68
||||||||||||||||||||||||||||
Sbjct: 40 tcatatcacagccattttgacgagtttg 67
>37209_dsi-mir-13b-1:mirbase
Length = 68
Score = 56.0 bits (28), Expect = 3e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 41 tcatatcacagccattttgacgagtttg 68
||||||||||||||||||||||||||||
Sbjct: 40 tcatatcacagccattttgacgagtttg 67
>37347_dvi-mir-13b-1:mirbase
Length = 68
Score = 56.0 bits (28), Expect = 3e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 41 tcatatcacagccattttgacgagtttg 68
||||||||||||||||||||||||||||
Sbjct: 40 tcatatcacagccattttgacgagtttg 67
>37501_dya-mir-13b-1:mirbase
Length = 68
Score = 56.0 bits (28), Expect = 3e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 41 tcatatcacagccattttgacgagtttg 68
||||||||||||||||||||||||||||
Sbjct: 40 tcatatcacagccattttgacgagtttg 67
>35180_aae-mir-13:mirbase
Length = 84
Score = 54.0 bits (27), Expect = 1e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 40 ttcatatcacagccattttgacgagtt 66
|||||||||||||||||||||||||||
Sbjct: 50 ttcatatcacagccattttgacgagtt 76
>37425_dwi-mir-13b-2:mirbase
Length = 67
Score = 54.0 bits (27), Expect = 1e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 40 ttcatatcacagccattttgacgagtt 66
|||||||||||||||||||||||||||
Sbjct: 40 ttcatatcacagccattttgacgagtt 66
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 6 gcgtcaaaatgactgtgagctatgt 30
|||||||||||||||||||||||||
Sbjct: 1 gcgtcaaaatgactgtgagctatgt 25
>37713_tca-mir-13b:mirbase
Length = 74
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 44 tatcacagccattttgacgagtttg 68
|||||||||||||||||||||||||
Sbjct: 46 tatcacagccattttgacgagtttg 70
>37714_tca-mir-13b:mirbase
Length = 74
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 44 tatcacagccattttgacgagtttg 68
|||||||||||||||||||||||||
Sbjct: 46 tatcacagccattttgacgagtttg 70
>36094_dan-mir-13a:mirbase
Length = 74
Score = 46.1 bits (23), Expect = 3e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 41 tcatatcacagccattttgacgagttt 67
|||||||||||||||||||| ||||||
Sbjct: 44 tcatatcacagccattttgatgagttt 70
>36172_der-mir-13a:mirbase
Length = 75
Score = 46.1 bits (23), Expect = 3e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 41 tcatatcacagccattttgacgagttt 67
|||||||||||||||||||| ||||||
Sbjct: 45 tcatatcacagccattttgatgagttt 71
>36260_dgr-mir-13a:mirbase
Length = 74
Score = 46.1 bits (23), Expect = 3e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 41 tcatatcacagccattttgacgagttt 67
|||||||||||||||||||| ||||||
Sbjct: 44 tcatatcacagccattttgatgagttt 70
>36359_dme-mir-13a:mirbase
Length = 75
Score = 46.1 bits (23), Expect = 3e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 41 tcatatcacagccattttgacgagttt 67
|||||||||||||||||||| ||||||
Sbjct: 45 tcatatcacagccattttgatgagttt 71
>36360_dme-mir-13a:mirbase
Length = 75
Score = 46.1 bits (23), Expect = 3e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 41 tcatatcacagccattttgacgagttt 67
|||||||||||||||||||| ||||||
Sbjct: 45 tcatatcacagccattttgatgagttt 71
>36770_dmo-mir-13a:mirbase
Length = 74
Score = 46.1 bits (23), Expect = 3e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 41 tcatatcacagccattttgacgagttt 67
|||||||||||||||||||| ||||||
Sbjct: 44 tcatatcacagccattttgatgagttt 70
>36843_dpe-mir-13a:mirbase
Length = 74
Score = 46.1 bits (23), Expect = 3e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 41 tcatatcacagccattttgacgagttt 67
|||||||||||||||||||| ||||||
Sbjct: 44 tcatatcacagccattttgatgagttt 70
>36919_dps-mir-13a:mirbase
Length = 74
Score = 46.1 bits (23), Expect = 3e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 41 tcatatcacagccattttgacgagttt 67
|||||||||||||||||||| ||||||
Sbjct: 44 tcatatcacagccattttgatgagttt 70
>37132_dse-mir-13a:mirbase
Length = 75
Score = 46.1 bits (23), Expect = 3e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 41 tcatatcacagccattttgacgagttt 67
|||||||||||||||||||| ||||||
Sbjct: 45 tcatatcacagccattttgatgagttt 71
>37208_dsi-mir-13a:mirbase
Length = 75
Score = 46.1 bits (23), Expect = 3e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 41 tcatatcacagccattttgacgagttt 67
|||||||||||||||||||| ||||||
Sbjct: 45 tcatatcacagccattttgatgagttt 71
>37346_dvi-mir-13a:mirbase
Length = 74
Score = 46.1 bits (23), Expect = 3e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 41 tcatatcacagccattttgacgagttt 67
|||||||||||||||||||| ||||||
Sbjct: 44 tcatatcacagccattttgatgagttt 70
>37423_dwi-mir-13a:mirbase
Length = 78
Score = 46.1 bits (23), Expect = 3e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 41 tcatatcacagccattttgacgagttt 67
|||||||||||||||||||| ||||||
Sbjct: 48 tcatatcacagccattttgatgagttt 74
>37500_dya-mir-13a:mirbase
Length = 75
Score = 46.1 bits (23), Expect = 3e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 41 tcatatcacagccattttgacgagttt 67
|||||||||||||||||||| ||||||
Sbjct: 45 tcatatcacagccattttgatgagttt 71
>35352_ame-mir-13a:mirbase
Length = 100
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 41 tcatatcacagccattttga 60
||||||||||||||||||||
Sbjct: 61 tcatatcacagccattttga 80
>37640_nvi-mir-13b:mirbase
Length = 92
Score = 40.1 bits (20), Expect = 2e-04
Identities = 27/28 (96%), Gaps = 1/28 (3%)
Strand = Plus / Plus
Query: 40 ttcatatcacagcca-ttttgacgagtt 66
||||||||||||||| ||||||||||||
Sbjct: 48 ttcatatcacagccatttttgacgagtt 75
>35353_ame-mir-13b:mirbase
Length = 79
Score = 38.2 bits (19), Expect = 7e-04
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 40 ttcatatcacagccatttt 58
|||||||||||||||||||
Sbjct: 46 ttcatatcacagccatttt 64
>35527_bmo-mir-13b:mirbase
Length = 80
Score = 38.2 bits (19), Expect = 7e-04
Identities = 26/27 (96%), Gaps = 1/27 (3%)
Strand = Plus / Plus
Query: 41 tcatatcacagcca-ttttgacgagtt 66
|||||||||||||| ||||||||||||
Sbjct: 45 tcatatcacagccatttttgacgagtt 71
>37572_ngi-mir-13a:mirbase
Length = 85
Score = 38.2 bits (19), Expect = 7e-04
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 42 catatcacagccattttga 60
|||||||||||||||||||
Sbjct: 49 catatcacagccattttga 67
>37606_nlo-mir-13a:mirbase
Length = 85
Score = 38.2 bits (19), Expect = 7e-04
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 42 catatcacagccattttga 60
|||||||||||||||||||
Sbjct: 49 catatcacagccattttga 67
>37639_nvi-mir-13a:mirbase
Length = 103
Score = 38.2 bits (19), Expect = 7e-04
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 42 catatcacagccattttga 60
|||||||||||||||||||
Sbjct: 65 catatcacagccattttga 83
