miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00667;mir-33;AC154052.1/87680-87612 7227:Drosophila
melanogaster (fruit fly)
Length = 69
Score = 137 bits (69), Expect = 3e-32
Identities = 69/69 (100%)
Strand = Plus / Plus
Query: 12 cgaaggtgcattgtagtcgcattgtctgtcccaattgcttcaggcaatacaacttcagtg 71
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 cgaaggtgcattgtagtcgcattgtctgtcccaattgcttcaggcaatacaacttcagtg 60
Query: 72 caagctctg 80
|||||||||
Sbjct: 61 caagctctg 69
>RF00667;mir-33;AAFS01000103.1/61981-62050 46245:Drosophila
pseudoobscura pseudoobscura
Length = 70
Score = 69.9 bits (35), Expect = 5e-12
Identities = 60/67 (89%), Gaps = 1/67 (1%)
Strand = Plus / Plus
Query: 15 aggtgcattgtagtcgcattgtctgtcccaattg-cttcaggcaatacaacttcagtgca 73
|||||||||||||||||||||||||||| ||| |||||||||||||||| || ||||
Sbjct: 4 aggtgcattgtagtcgcattgtctgtccatcttgatttcaggcaatacaactgcaatgca 63
Query: 74 agctctg 80
|||||||
Sbjct: 64 agctctg 70
>RF00667;mir-33;AANI01017473.1/521223-521153 7244:Drosophila
virilis
Length = 71
Score = 61.9 bits (31), Expect = 1e-09
Identities = 58/66 (87%), Gaps = 2/66 (3%)
Strand = Plus / Plus
Query: 15 aggtgcattgtagtcgcattgtctgtcccaa--ttgcttcaggcaatacaacttcagtgc 72
||||||||||||||||||||||||||| ||| |||| |||||||||||| ||||||
Sbjct: 4 aggtgcattgtagtcgcattgtctgtctcaaatttgcccgcggcaatacaactgcagtgc 63
Query: 73 aagctc 78
||||||
Sbjct: 64 aagctc 69
>RF00667;mir-33;AAQB01006223.1/189436-189525 7260:Drosophila
willistoni
Length = 90
Score = 58.0 bits (29), Expect = 2e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 12 cgaaggtgcattgtagtcgcattgtctgt 40
|||||||||||||||||||||||||||||
Sbjct: 1 cgaaggtgcattgtagtcgcattgtctgt 29
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 50 ttcaggcaatacaacttcagtgcaagct 77
|||||||||||||||| |||||||||||
Sbjct: 60 ttcaggcaatacaactgcagtgcaagct 87
>RF00667;mir-33;AAPU01011618.1/111826-111755 7230:Drosophila
mojavensis
Length = 72
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 15 aggtgcattgtagtcgcattgtctgt 40
||||||||||||||||||||||||||
Sbjct: 4 aggtgcattgtagtcgcattgtctgt 29
