miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00711;mir-449;AASS01031694.1/773-875 7240:Drosophila simulans
Length = 103
Score = 190 bits (96), Expect = 2e-48
Identities = 96/96 (100%)
Strand = Plus / Plus
Query: 1 tggctatgcgctttggcagtgtggttagctggttgtgtagccaattattgccgttgacaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3 tggctatgcgctttggcagtgtggttagctggttgtgtagccaattattgccgttgacaa 62
Query: 61 ttcacagccactatcttcactgccgccgcgacaagc 96
||||||||||||||||||||||||||||||||||||
Sbjct: 63 ttcacagccactatcttcactgccgccgcgacaagc 98
>RF00711;mir-449;AAFS01000411.1/37510-37407 46245:Drosophila
pseudoobscura pseudoobscura
Length = 104
Score = 153 bits (77), Expect = 5e-37
Identities = 93/97 (95%), Gaps = 1/97 (1%)
Strand = Plus / Plus
Query: 1 tggctatgcgctttggcagtgtggttagctggttgtgtagcc-aattattgccgttgaca 59
|||||||||||||||||||||||||||||||||||||||||| || ||||||| |||||
Sbjct: 3 tggctatgcgctttggcagtgtggttagctggttgtgtagccaaaatattgcctttgacc 62
Query: 60 attcacagccactatcttcactgccgccgcgacaagc 96
|||||||||||||||||||||||||||||||||||||
Sbjct: 63 attcacagccactatcttcactgccgccgcgacaagc 99
>RF00711;mir-449;AAPQ01006467.1/383882-383780 7220:Drosophila
erecta
Length = 103
Score = 151 bits (76), Expect = 2e-36
Identities = 91/96 (94%)
Strand = Plus / Plus
Query: 1 tggctatgcgctttggcagtgtggttagctggttgtgtagccaattattgccgttgacaa 60
||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct: 3 tggctatgcgctttggcagtgtggttagctggttgtgtagccaatcattgcttgtgacaa 62
Query: 61 ttcacagccactatcttcactgccgccgcgacaagc 96
|||||||||||||||||||||||||||||||||||
Sbjct: 63 ctcacagccactatcttcactgccgccgcgacaagc 98
>RF00711;mir-449;AANI01014607.1/367710-367617 7244:Drosophila
virilis
Length = 94
Score = 111 bits (56), Expect = 2e-24
Identities = 85/96 (88%), Gaps = 9/96 (9%)
Strand = Plus / Plus
Query: 1 tggctatgcgctttggcagtgtggttagctggttgtgtagccaattattgccgttgacaa 60
|||||||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct: 3 tggctatgcgctttggcagtgtggttagctggttgtgtggccaa---------ttgacaa 53
Query: 61 ttcacagccactatcttcactgccgccgcgacaagc 96
|||||||||||||||||||||||||||||||||||
Sbjct: 54 atcacagccactatcttcactgccgccgcgacaagc 89
>RF00711;mir-449;AAQB01008630.1/408110-408004 7260:Drosophila
willistoni
Length = 107
Score = 97.6 bits (49), Expect = 2e-20
Identities = 88/98 (89%), Gaps = 6/98 (6%)
Strand = Plus / Plus
Query: 1 tggctatgcgctttggcagtgtggttagctggttgtgtagccaatt--attgccgttgac 58
|||||||||||||||||||||||||||||||||||||||||||||| |||||| ||
Sbjct: 3 tggctatgcgctttggcagtgtggttagctggttgtgtagccaattaaattgcc-aaaac 61
Query: 59 aat---tcacagccactatcttcactgccgccgcgaca 93
||| |||||||||||||||||||||||||||||||
Sbjct: 62 aataaaccacagccactatcttcactgccgccgcgaca 99
>RF00711;mir-449;AAPP01019533.1/13885-13988 7217:Drosophila
ananassae
Length = 104
Score = 93.7 bits (47), Expect = 4e-19
Identities = 89/101 (88%), Gaps = 9/101 (8%)
Strand = Plus / Plus
Query: 1 tggctatgcgctttggcagtgtggttagctggttgtgtagccaattattgc-cgttgac- 58
||||||||||||||||||||||||||||||||||||||||| | ||| ||||| |
Sbjct: 3 tggctatgcgctttggcagtgtggttagctggttgtgtagc----tggtgctcgttggca 58
Query: 59 ---aattcacagccactatcttcactgccgccgcgacaagc 96
||||||||||||||||||||||||||||||||||||||
Sbjct: 59 attaattcacagccactatcttcactgccgccgcgacaagc 99
>RF00711;mir-449;AAZX01003771.1/10900-10991 7425:Nasonia
vitripennis (jewel wasp)
Length = 92
Score = 58.0 bits (29), Expect = 2e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 13 ttggcagtgtggttagctggttgtgtagc 41
|||||||||||||||||||||||||||||
Sbjct: 15 ttggcagtgtggttagctggttgtgtagc 43
>RF00711;mir-449;AAGE02012646.1/4275-4404 7159:Aedes aegypti
(yellow fever mosquito)
Length = 130
Score = 56.0 bits (28), Expect = 8e-08
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 9 cgctttggcagtgtggttagctggttgtgtag 40
|||| |||||||||||||||||||||||||||
Sbjct: 11 cgctatggcagtgtggttagctggttgtgtag 42
>RF00711;mir-449;BABH01019946.1/3350-3261 7091:Bombyx mori
(domestic silkworm)
Length = 90
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 13 ttggcagtgtggttagctggttgtgta 39
|||||||||||||||||||||||||||
Sbjct: 15 ttggcagtgtggttagctggttgtgta 41
>RF00711;mir-449;AAZO01004205.1/1293-1391 121224:Pediculus humanus
corporis (human body louse)
Length = 99
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 13 ttggcagtgtggttagctggttgtgt 38
||||||||||||||||||||||||||
Sbjct: 15 ttggcagtgtggttagctggttgtgt 40
>RF00711;mir-449;ABKQ02014207.1/244697-244790 377270:Anopheles
gambiae S
Length = 94
Score = 52.0 bits (26), Expect = 1e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 9 cgctttggcagtgtggttagctggttgtgt 38
|||| |||||||||||||||||||||||||
Sbjct: 12 cgctctggcagtgtggttagctggttgtgt 41
>RF00711;mir-449;AAJJ01000475.1/25339-25252 7070:Tribolium
castaneum (red flour beetle)
Length = 88
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 14 tggcagtgtggttagctggttgtgt 38
|||||||||||||||||||||||||
Sbjct: 16 tggcagtgtggttagctggttgtgt 40
>RF00711;mir-449;AAQA01000334.1/14819-14733 6279:Brugia malayi
Length = 87
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 14 tggcagtgtggttagctggttgt 36
|||||||||||||||||||||||
Sbjct: 16 tggcagtgtggttagctggttgt 38
>RF00711;mir-449;AADG05001988.1/87357-87449 7460:Apis mellifera
(honey bee)
Length = 93
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 13 ttggcagtgtggttagctggttgtgt 38
|||||||||| |||||||||||||||
Sbjct: 15 ttggcagtgttgttagctggttgtgt 40
