miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>36181_der-mir-87:mirbase
Length = 92
Score = 151 bits (76), Expect = 1e-37
Identities = 88/92 (95%)
Strand = Plus / Plus
Query: 1 catatttcattcgcgcctgtatcttgctgaaccgttacaattatggtcttcgatccggtt 60
|||||||||||||||||||||||||||||||||||| | ||||||| || ||||||||||
Sbjct: 1 catatttcattcgcgcctgtatcttgctgaaccgttgccattatggcctacgatccggtt 60
Query: 61 gagcaaaatttcaggtgtgtgagaaatttgtt 92
||||||||||||||||||||||||||||||||
Sbjct: 61 gagcaaaatttcaggtgtgtgagaaatttgtt 92
>36377_dme-mir-87:mirbase
Length = 99
Score = 121 bits (61), Expect = 9e-29
Identities = 82/89 (92%)
Strand = Plus / Plus
Query: 4 atttcattcgcgcctgtatcttgctgaaccgttacaattatggtcttcgatccggttgag 63
||||||||||||||||||||||||||||||| | | ||||||| | |||||||||||||
Sbjct: 6 atttcattcgcgcctgtatcttgctgaaccgctgccattatggccaacgatccggttgag 65
Query: 64 caaaatttcaggtgtgtgagaaatttgtt 92
|||||||||||||||||||||||| ||||
Sbjct: 66 caaaatttcaggtgtgtgagaaatgtgtt 94
>36378_dme-mir-87:mirbase
Length = 99
Score = 121 bits (61), Expect = 9e-29
Identities = 82/89 (92%)
Strand = Plus / Plus
Query: 4 atttcattcgcgcctgtatcttgctgaaccgttacaattatggtcttcgatccggttgag 63
||||||||||||||||||||||||||||||| | | ||||||| | |||||||||||||
Sbjct: 6 atttcattcgcgcctgtatcttgctgaaccgctgccattatggccaacgatccggttgag 65
Query: 64 caaaatttcaggtgtgtgagaaatttgtt 92
|||||||||||||||||||||||| ||||
Sbjct: 66 caaaatttcaggtgtgtgagaaatgtgtt 94
>36852_dpe-mir-87:mirbase
Length = 93
Score = 121 bits (61), Expect = 9e-29
Identities = 86/93 (92%), Gaps = 1/93 (1%)
Strand = Plus / Plus
Query: 1 catatttcattcgcgcctgtatcttgctgaaccgttacaattatggtcttcgatcc-ggt 59
||||||||||||||||||||||||||||||||||| | || |||||||| |||| |||
Sbjct: 1 catatttcattcgcgcctgtatcttgctgaaccgtagccataatggtctttcatcccggt 60
Query: 60 tgagcaaaatttcaggtgtgtgagaaatttgtt 92
|||||||||||||||||||||||||||||||||
Sbjct: 61 tgagcaaaatttcaggtgtgtgagaaatttgtt 93
>36928_dps-mir-87:mirbase
Length = 98
Score = 121 bits (61), Expect = 9e-29
Identities = 86/93 (92%), Gaps = 1/93 (1%)
Strand = Plus / Plus
Query: 1 catatttcattcgcgcctgtatcttgctgaaccgttacaattatggtcttcgatcc-ggt 59
||||||||||||||||||||||||||||||||||| | || |||||||| |||| |||
Sbjct: 1 catatttcattcgcgcctgtatcttgctgaaccgtagccataatggtctttcatcccggt 60
Query: 60 tgagcaaaatttcaggtgtgtgagaaatttgtt 92
|||||||||||||||||||||||||||||||||
Sbjct: 61 tgagcaaaatttcaggtgtgtgagaaatttgtt 93
>37434_dwi-mir-87-2:mirbase
Length = 93
Score = 121 bits (61), Expect = 9e-29
Identities = 87/93 (93%), Gaps = 2/93 (2%)
Strand = Plus / Plus
Query: 1 catatttcattcgcgcctgtatcttgctgaaccgtta-caattatggtcttc-gatccgg 58
||||||||||||||||||||||||||||||||||||| ||||| || ||||| |||||
Sbjct: 1 catatttcattcgcgcctgtatcttgctgaaccgttaccaattgtgatcttcatttccgg 60
Query: 59 ttgagcaaaatttcaggtgtgtgagaaatttgt 91
|||||||||||||||||||||||||||||||||
Sbjct: 61 ttgagcaaaatttcaggtgtgtgagaaatttgt 93
>37141_dse-mir-87:mirbase
Length = 92
Score = 113 bits (57), Expect = 2e-26
Identities = 81/89 (91%)
Strand = Plus / Plus
Query: 4 atttcattcgcgcctgtatcttgctgaaccgttacaattatggtcttcgatccggttgag 63
||||||||||||||||||||||||||||||| | | || |||| | |||||||||||||
Sbjct: 4 atttcattcgcgcctgtatcttgctgaaccgctgccatcatggccaacgatccggttgag 63
Query: 64 caaaatttcaggtgtgtgagaaatttgtt 92
|||||||||||||||||||||||| ||||
Sbjct: 64 caaaatttcaggtgtgtgagaaatgtgtt 92
>37216_dsi-mir-87:mirbase
Length = 92
Score = 113 bits (57), Expect = 2e-26
Identities = 81/89 (91%)
Strand = Plus / Plus
Query: 4 atttcattcgcgcctgtatcttgctgaaccgttacaattatggtcttcgatccggttgag 63
||||||||||||||||||||||||||||||| | | || |||| | |||||||||||||
Sbjct: 4 atttcattcgcgcctgtatcttgctgaaccgctgccatcatggccaacgatccggttgag 63
Query: 64 caaaatttcaggtgtgtgagaaatttgtt 92
|||||||||||||||||||||||| ||||
Sbjct: 64 caaaatttcaggtgtgtgagaaatgtgtt 92
>37433_dwi-mir-87-1:mirbase
Length = 93
Score = 113 bits (57), Expect = 2e-26
Identities = 86/93 (92%), Gaps = 2/93 (2%)
Strand = Plus / Plus
Query: 1 catatttcattcgcgcctgtatcttgctgaaccgtta-caattatggtcttc-gatccgg 58
||||||||||||||||||||||||||||||||||||| ||||| || || || |||||
Sbjct: 1 catatttcattcgcgcctgtatcttgctgaaccgttaccaattgtgatcatcatttccgg 60
Query: 59 ttgagcaaaatttcaggtgtgtgagaaatttgt 91
|||||||||||||||||||||||||||||||||
Sbjct: 61 ttgagcaaaatttcaggtgtgtgagaaatttgt 93
>36103_dan-mir-87:mirbase
Length = 92
Score = 111 bits (56), Expect = 9e-26
Identities = 83/92 (90%)
Strand = Plus / Plus
Query: 1 catatttcattcgcgcctgtatcttgctgaaccgttacaattatggtcttcgatccggtt 60
|||||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct: 1 catatttcattcgcgcctgtatcttgctgaaccgttaccgatatggcacagaatccggtt 60
Query: 61 gagcaaaatttcaggtgtgtgagaaatttgtt 92
||||||||||||||||||||||||||||||||
Sbjct: 61 gagcaaaatttcaggtgtgtgagaaatttgtt 92
>36269_dgr-mir-87:mirbase
Length = 92
Score = 111 bits (56), Expect = 9e-26
Identities = 84/92 (91%), Gaps = 1/92 (1%)
Strand = Plus / Plus
Query: 1 catatttcattcgcgcctgtatcttgctgaaccgttacaattatggtcttcga-tccggt 59
|||||||||||||||||||||||||||||||||||||| ||| || | | | ||||||
Sbjct: 1 catatttcattcgcgcctgtatcttgctgaaccgttaccattgtgacatccaaatccggt 60
Query: 60 tgagcaaaatttcaggtgtgtgagaaatttgt 91
||||||||||||||||||||||||||||||||
Sbjct: 61 tgagcaaaatttcaggtgtgtgagaaatttgt 92
>37355_dvi-mir-87:mirbase
Length = 92
Score = 111 bits (56), Expect = 9e-26
Identities = 84/92 (91%), Gaps = 1/92 (1%)
Strand = Plus / Plus
Query: 1 catatttcattcgcgcctgtatcttgctgaaccgttacaattatggtct-tcgatccggt 59
|||||||||||||||||||||||||||||||||||||||||| | | | |||||||
Sbjct: 1 catatttcattcgcgcctgtatcttgctgaaccgttacaattgagacatctaaatccggt 60
Query: 60 tgagcaaaatttcaggtgtgtgagaaatttgt 91
||||||||||||||||||||||||||||||||
Sbjct: 61 tgagcaaaatttcaggtgtgtgagaaatttgt 92
>36779_dmo-mir-87:mirbase
Length = 92
Score = 103 bits (52), Expect = 2e-23
Identities = 80/88 (90%), Gaps = 1/88 (1%)
Strand = Plus / Plus
Query: 5 tttcattcgcgcctgtatcttgctgaaccgttacaattatggtcttcga-tccggttgag 63
|||||||||||||||||||||||||||||||||||||| | | | | ||||||||||
Sbjct: 5 tttcattcgcgcctgtatcttgctgaaccgttacaattgtcacatccaaatccggttgag 64
Query: 64 caaaatttcaggtgtgtgagaaatttgt 91
||||||||||||||||||||||||||||
Sbjct: 65 caaaatttcaggtgtgtgagaaatttgt 92
>35361_ame-mir-87-1:mirbase
Length = 100
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 60 tgagcaaaatttcaggtgtgtgag 83
|||||||| |||||||||||||||
Sbjct: 71 tgagcaaagtttcaggtgtgtgag 94
