miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00726;mir-87;AADE01000150.1/47415-47513 46245:Drosophila
pseudoobscura pseudoobscura
Length = 99
Score = 121 bits (61), Expect = 2e-27
Identities = 86/93 (92%), Gaps = 1/93 (1%)
Strand = Plus / Plus
Query: 1 catatttcattcgcgcctgtatcttgctgaaccgttacaattatggtcttcgatcc-ggt 59
||||||||||||||||||||||||||||||||||| | || |||||||| |||| |||
Sbjct: 2 catatttcattcgcgcctgtatcttgctgaaccgtagccataatggtctttcatcccggt 61
Query: 60 tgagcaaaatttcaggtgtgtgagaaatttgtt 92
|||||||||||||||||||||||||||||||||
Sbjct: 62 tgagcaaaatttcaggtgtgtgagaaatttgtt 94
>RF00726;mir-87;AASW01042897.1/1205-1302 7240:Drosophila simulans
Length = 98
Score = 121 bits (61), Expect = 2e-27
Identities = 82/89 (92%)
Strand = Plus / Plus
Query: 4 atttcattcgcgcctgtatcttgctgaaccgttacaattatggtcttcgatccggttgag 63
||||||||||||||||||||||||||||||| | | ||||||| | |||||||||||||
Sbjct: 5 atttcattcgcgcctgtatcttgctgaaccgctgccattatggccaacgatccggttgag 64
Query: 64 caaaatttcaggtgtgtgagaaatttgtt 92
|||||||||||||||||||||||| ||||
Sbjct: 65 caaaatttcaggtgtgtgagaaatgtgtt 93
>RF00726;mir-87;AAQB01006452.1/3553-3454 7260:Drosophila
willistoni
Length = 100
Score = 113 bits (57), Expect = 4e-25
Identities = 86/93 (92%), Gaps = 2/93 (2%)
Strand = Plus / Plus
Query: 1 catatttcattcgcgcctgtatcttgctgaaccgtta-caattatggtcttc-gatccgg 58
||||||||||||||||||||||||||||||||||||| ||||| || || || |||||
Sbjct: 2 catatttcattcgcgcctgtatcttgctgaaccgttaccaattgtgatcatcatttccgg 61
Query: 59 ttgagcaaaatttcaggtgtgtgagaaatttgt 91
|||||||||||||||||||||||||||||||||
Sbjct: 62 ttgagcaaaatttcaggtgtgtgagaaatttgt 94
>RF00726;mir-87;AAPP01015726.1/103266-103169 7217:Drosophila
ananassae
Length = 98
Score = 111 bits (56), Expect = 2e-24
Identities = 83/92 (90%)
Strand = Plus / Plus
Query: 1 catatttcattcgcgcctgtatcttgctgaaccgttacaattatggtcttcgatccggtt 60
|||||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct: 2 catatttcattcgcgcctgtatcttgctgaaccgttaccgatatggcacagaatccggtt 61
Query: 61 gagcaaaatttcaggtgtgtgagaaatttgtt 92
||||||||||||||||||||||||||||||||
Sbjct: 62 gagcaaaatttcaggtgtgtgagaaatttgtt 93
>RF00726;mir-87;AAPU01010611.1/255409-255311 7230:Drosophila
mojavensis
Length = 99
Score = 103 bits (52), Expect = 4e-22
Identities = 80/88 (90%), Gaps = 1/88 (1%)
Strand = Plus / Plus
Query: 5 tttcattcgcgcctgtatcttgctgaaccgttacaattatggtcttcga-tccggttgag 63
|||||||||||||||||||||||||||||||||||||| | | | | ||||||||||
Sbjct: 6 tttcattcgcgcctgtatcttgctgaaccgttacaattgtcacatccaaatccggttgag 65
Query: 64 caaaatttcaggtgtgtgagaaatttgt 91
||||||||||||||||||||||||||||
Sbjct: 66 caaaatttcaggtgtgtgagaaatttgt 93
