miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00657;mir-184;AAPU01010071.1/6500-6418 7230:Drosophila
mojavensis
Length = 83
Score = 117 bits (59), Expect = 2e-26
Identities = 78/83 (93%), Gaps = 1/83 (1%)
Strand = Plus / Plus
Query: 4 gtgcattcgtacccttatcattctctcgccccgtgtgcat-tgaagacaactggacggag 62
||||||||||||||||||||||||| |||||||||||||| | | ||||||||||||||
Sbjct: 1 gtgcattcgtacccttatcattctcgcgccccgtgtgcatatctatacaactggacggag 60
Query: 63 aactgataagggctcgtatcacc 85
|||||||||||||||||||||||
Sbjct: 61 aactgataagggctcgtatcacc 83
>RF00657;mir-184;AAAB01008980.1/6487239-6487319 180454:Anopheles
gambiae str. PEST
Length = 81
Score = 79.8 bits (40), Expect = 5e-15
Identities = 65/72 (90%), Gaps = 1/72 (1%)
Strand = Plus / Plus
Query: 4 gtgcattcgtacccttatcattctctcgccccgtgtgcattgaagacaactggacggaga 63
||||| ||| |||||||||||||| ||||||||||||| || | |||||||||||||||
Sbjct: 1 gtgcactcgaacccttatcattctttcgccccgtgtgctttcta-acaactggacggaga 59
Query: 64 actgataagggc 75
||||||||||||
Sbjct: 60 actgataagggc 71
>RF00657;mir-184;ABLF01000583.1/9706-9626 7029:Acyrthosiphon pisum
(pea aphid)
Length = 81
Score = 60.0 bits (30), Expect = 5e-09
Identities = 58/66 (87%), Gaps = 1/66 (1%)
Strand = Plus / Plus
Query: 16 ccttatcattctctcgccccgtgtgcattgaagacaactggacggagaactgataagggc 75
|||||||||||| ||||| ||||||| | | |||||||||||||||||||||||||||
Sbjct: 13 ccttatcattct-tcgccttgtgtgcaatttaaacaactggacggagaactgataagggc 71
Query: 76 tcgtat 81
| ||||
Sbjct: 72 tggtat 77
>RF00657;mir-184;AAGE02019030.1/3534-3452 7159:Aedes aegypti
(yellow fever mosquito)
Length = 83
Score = 58.0 bits (29), Expect = 2e-08
Identities = 60/69 (86%), Gaps = 1/69 (1%)
Strand = Plus / Plus
Query: 8 attcgtacccttatcattctctcgccccgtg-tgcattgaagacaactggacggagaact 66
|||||||||||||||||||| ||||||||| | |||| | | |||||||||||||||
Sbjct: 5 attcgtacccttatcattcttgcgccccgtgttatattgttggcgactggacggagaact 64
Query: 67 gataagggc 75
|||||||||
Sbjct: 65 gataagggc 73
>RF00657;mir-184;AAJJ01000543.1/40724-40802 7070:Tribolium
castaneum (red flour beetle)
Length = 79
Score = 56.0 bits (28), Expect = 8e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 49 acaactggacggagaactgataagggct 76
||||||||||||||||||||||||||||
Sbjct: 43 acaactggacggagaactgataagggct 70
>RF00657;mir-184;AAZO01006369.1/2415-2497 121224:Pediculus humanus
corporis (human body louse)
Length = 83
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 54 tggacggagaactgataagggctcgt 79
||||||||||||||||||||||||||
Sbjct: 52 tggacggagaactgataagggctcgt 77
>RF00657;mir-184;AADG05004767.1/16887-16970 7460:Apis mellifera
(honey bee)
Length = 84
Score = 50.1 bits (25), Expect = 5e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 47 agacaactggacggagaactgataagggc 75
|||| ||||||||||||||||||||||||
Sbjct: 46 agacgactggacggagaactgataagggc 74
>RF00657;mir-184;AAGJ02116195.1/16137-16046
7668:Strongylocentrotus purpuratus
Length = 92
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 53 ctggacggagaactgataagggct 76
||||||||||||||||||||||||
Sbjct: 60 ctggacggagaactgataagggct 83
>RF00657;mir-184;AABS01000135.1/138381-138283 7719:Ciona
intestinalis
Length = 99
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 54 tggacggagaactgataagggctc 77
||||||||||||||||||||||||
Sbjct: 68 tggacggagaactgataagggctc 91
>RF00657;mir-184;BAAB01083504.1/1731-1651 7091:Bombyx mori
(domestic silkworm)
Length = 81
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 52 actggacggagaactgataagggc 75
||||||||||||||||||||||||
Sbjct: 48 actggacggagaactgataagggc 71
>RF00657;mir-184;AC185288.4/52827-52910 7425:Nasonia vitripennis
(jewel wasp)
Length = 84
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 52 actggacggagaactgataagggc 75
||||||||||||||||||||||||
Sbjct: 51 actggacggagaactgataagggc 74
>RF00657;mir-184;ABJB010201781.1/2990-3072 6945:Ixodes scapularis
(black-legged tick)
Length = 83
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 53 ctggacggagaactgataagggct 76
||||||||||||||||||||||||
Sbjct: 51 ctggacggagaactgataagggct 74
>RF00657;mir-184;AACT01014507.1/19083-19005 51511:Ciona savignyi
Length = 79
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 54 tggacggagaactgataagggct 76
|||||||||||||||||||||||
Sbjct: 48 tggacggagaactgataagggct 70
>RF00657;mir-184;AAVX01446026.1/144-63 7868:Callorhinchus milii
(ghost shark)
Length = 82
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 54 tggacggagaactgataagggct 76
|||||||||||||||||||||||
Sbjct: 51 tggacggagaactgataagggct 73
>RF00657;mir-184;ABEP02024042.1/7891-7807 7739:Branchiostoma
floridae (Florida lancelet)
Length = 85
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 53 ctggacggagaactgataagggc 75
|||||||||||||||||||||||
Sbjct: 53 ctggacggagaactgataagggc 75
>RF00657;mir-184;AANN01245614.1/108-185 9365:Erinaceus europaeus
(western European hedgehog)
Length = 78
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 53 ctggacggagaactgataaggg 74
||||||||||||||||||||||
Sbjct: 46 ctggacggagaactgataaggg 67
>RF00657;mir-184;CR352253.9/159514-159598 7955:Danio rerio
(zebrafish)
Length = 85
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 54 tggacggagaactgataagggc 75
||||||||||||||||||||||
Sbjct: 54 tggacggagaactgataagggc 75
>RF00657;mir-184;CR356246.5/16955-16871 7955:Danio rerio
(zebrafish)
Length = 85
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 54 tggacggagaactgataagggc 75
||||||||||||||||||||||
Sbjct: 54 tggacggagaactgataagggc 75
>RF00657;mir-184;AANH01000282.1/6070-5986 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 85
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 54 tggacggagaactgataagggc 75
||||||||||||||||||||||
Sbjct: 54 tggacggagaactgataagggc 75
>RF00657;mir-184;BAAF04083164.1/7464-7548 8090:Oryzias latipes
(Japanese medaka)
Length = 85
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 54 tggacggagaactgataagggc 75
||||||||||||||||||||||
Sbjct: 54 tggacggagaactgataagggc 75
