miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>36191_der-mir-263a:mirbase
Length = 90
Score = 170 bits (86), Expect = 1e-43
Identities = 89/90 (98%)
Strand = Plus / Plus
Query: 1 gatctcggcacagttaatggcactggaagaattcacggggtactttttatacaacccgtg 60
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 1 gatctcggcacagttaatggcactggaagaattcacggggtacttttgatacaacccgtg 60
Query: 61 atctcttagtggcatctatggtgcgagaat 90
||||||||||||||||||||||||||||||
Sbjct: 61 atctcttagtggcatctatggtgcgagaat 90
>36405_dme-mir-263a:mirbase
Length = 94
Score = 170 bits (86), Expect = 1e-43
Identities = 89/90 (98%)
Strand = Plus / Plus
Query: 1 gatctcggcacagttaatggcactggaagaattcacggggtactttttatacaacccgtg 60
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 3 gatctcggcacagttaatggcactggaagaattcacggggtaatttttatacaacccgtg 62
Query: 61 atctcttagtggcatctatggtgcgagaat 90
||||||||||||||||||||||||||||||
Sbjct: 63 atctcttagtggcatctatggtgcgagaat 92
>36406_dme-mir-263a:mirbase
Length = 94
Score = 170 bits (86), Expect = 1e-43
Identities = 89/90 (98%)
Strand = Plus / Plus
Query: 1 gatctcggcacagttaatggcactggaagaattcacggggtactttttatacaacccgtg 60
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 3 gatctcggcacagttaatggcactggaagaattcacggggtaatttttatacaacccgtg 62
Query: 61 atctcttagtggcatctatggtgcgagaat 90
||||||||||||||||||||||||||||||
Sbjct: 63 atctcttagtggcatctatggtgcgagaat 92
>37230_dsi-mir-263a:mirbase
Length = 90
Score = 170 bits (86), Expect = 1e-43
Identities = 89/90 (98%)
Strand = Plus / Plus
Query: 1 gatctcggcacagttaatggcactggaagaattcacggggtactttttatacaacccgtg 60
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 1 gatctcggcacagttaatggcactggaagaattcacggggtaatttttatacaacccgtg 60
Query: 61 atctcttagtggcatctatggtgcgagaat 90
||||||||||||||||||||||||||||||
Sbjct: 61 atctcttagtggcatctatggtgcgagaat 90
>37151_dse-mir-263a:mirbase
Length = 90
Score = 163 bits (82), Expect = 3e-41
Identities = 88/90 (97%)
Strand = Plus / Plus
Query: 1 gatctcggcacagttaatggcactggaagaattcacggggtactttttatacaacccgtg 60
||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 1 gatctcgacacagttaatggcactggaagaattcacggggtaatttttatacaacccgtg 60
Query: 61 atctcttagtggcatctatggtgcgagaat 90
||||||||||||||||||||||||||||||
Sbjct: 61 atctcttagtggcatctatggtgcgagaat 90
>36113_dan-mir-263a:mirbase
Length = 90
Score = 151 bits (76), Expect = 1e-37
Identities = 82/84 (97%)
Strand = Plus / Plus
Query: 2 atctcggcacagttaatggcactggaagaattcacggggtactttttatacaacccgtga 61
||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||
Sbjct: 1 atctcggcacagttaatggcactggaagaattcacggggtaatttctatacaacccgtga 60
Query: 62 tctcttagtggcatctatggtgcg 85
||||||||||||||||||||||||
Sbjct: 61 tctcttagtggcatctatggtgcg 84
>36865_dpe-mir-263a:mirbase
Length = 89
Score = 119 bits (60), Expect = 4e-28
Identities = 76/80 (95%), Gaps = 1/80 (1%)
Strand = Plus / Plus
Query: 6 cggcacagttaatggcactggaagaattcacggggtactttttatacaacccgtgatctc 65
|||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||
Sbjct: 6 cggcacagttaatggcactggaagaattcacggggtt-tttcaatacaacccgtgatctc 64
Query: 66 ttagtggcatctatggtgcg 85
||||||||||||||||||||
Sbjct: 65 ttagtggcatctatggtgcg 84
>36944_dps-mir-263a:mirbase
Length = 92
Score = 119 bits (60), Expect = 4e-28
Identities = 76/80 (95%), Gaps = 1/80 (1%)
Strand = Plus / Plus
Query: 6 cggcacagttaatggcactggaagaattcacggggtactttttatacaacccgtgatctc 65
|||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||
Sbjct: 7 cggcacagttaatggcactggaagaattcacggggtt-tttcaatacaacccgtgatctc 65
Query: 66 ttagtggcatctatggtgcg 85
||||||||||||||||||||
Sbjct: 66 ttagtggcatctatggtgcg 85
>37105_dps-mir-3983:mirbase
Length = 88
Score = 119 bits (60), Expect = 4e-28
Identities = 76/80 (95%), Gaps = 1/80 (1%)
Strand = Plus / Minus
Query: 6 cggcacagttaatggcactggaagaattcacggggtactttttatacaacccgtgatctc 65
|||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||
Sbjct: 83 cggcacagttaatggcactggaagaattcacggggtt-tttcaatacaacccgtgatctc 25
Query: 66 ttagtggcatctatggtgcg 85
||||||||||||||||||||
Sbjct: 24 ttagtggcatctatggtgcg 5
>37444_dwi-mir-263a:mirbase
Length = 91
Score = 113 bits (57), Expect = 2e-26
Identities = 79/85 (92%), Gaps = 1/85 (1%)
Strand = Plus / Plus
Query: 2 atctcggcacagttaatggcactggaagaattcacggggtactttttataca-acccgtg 60
|||||||||||||||||||||||||||||||||||||||| || || ||| |||||||
Sbjct: 1 atctcggcacagttaatggcactggaagaattcacggggtttttatttaacacacccgtg 60
Query: 61 atctcttagtggcatctatggtgcg 85
|||||||||||||||||||||||||
Sbjct: 61 atctcttagtggcatctatggtgcg 85
>36280_dgr-mir-263a:mirbase
Length = 89
Score = 111 bits (56), Expect = 9e-26
Identities = 78/84 (92%), Gaps = 1/84 (1%)
Strand = Plus / Plus
Query: 2 atctcggcacagttaatggcactggaagaattcacggggtactttttatacaacccgtga 61
|||||||||||||||||||||||||||||||||||||||| |||| | || |||||||
Sbjct: 1 atctcggcacagttaatggcactggaagaattcacggggttattttaacac-gcccgtga 59
Query: 62 tctcttagtggcatctatggtgcg 85
||||||||||||||||||||||||
Sbjct: 60 tctcttagtggcatctatggtgcg 83
>37365_dvi-mir-263a:mirbase
Length = 89
Score = 105 bits (53), Expect = 5e-24
Identities = 79/86 (91%), Gaps = 5/86 (5%)
Strand = Plus / Plus
Query: 2 atctcggcacagttaatggcactggaagaattcacggggtactttttatacaa--cccgt 59
||||||||||||||||||||||||||||||||||||||| |||||||| | |||||
Sbjct: 1 atctcggcacagttaatggcactggaagaattcacgggg---tttttataacacgcccgt 57
Query: 60 gatctcttagtggcatctatggtgcg 85
||||||||||||||||||||||||||
Sbjct: 58 gatctcttagtggcatctatggtgcg 83
>36789_dmo-mir-263a:mirbase
Length = 89
Score = 103 bits (52), Expect = 2e-23
Identities = 77/84 (91%), Gaps = 1/84 (1%)
Strand = Plus / Plus
Query: 2 atctcggcacagttaatggcactggaagaattcacggggtactttttatacaacccgtga 61
|||||||||||||||||||||||||||||||||||||||| || | | || |||||||
Sbjct: 1 atctcggcacagttaatggcactggaagaattcacggggtttttctaacac-gcccgtga 59
Query: 62 tctcttagtggcatctatggtgcg 85
||||||||||||||||||||||||
Sbjct: 60 tctcttagtggcatctatggtgcg 83
>34978_isc-mir-263a:mirbase
Length = 100
Score = 52.0 bits (26), Expect = 7e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 16 aatggcactggaagaattcacggggt 41
||||||||||||||||||||||||||
Sbjct: 21 aatggcactggaagaattcacggggt 46
>35545_bmo-mir-263a:mirbase
Length = 95
Score = 52.0 bits (26), Expect = 7e-08
Identities = 55/62 (88%), Gaps = 2/62 (3%)
Strand = Plus / Plus
Query: 16 aatggcactggaagaattcacggggt-actttttatacaacccgtgatctcttagtggca 74
|||||||||||||||||||||||| | | ||| |||| ||||||||||||||||||||
Sbjct: 19 aatggcactggaagaattcacgggttcagtttatata-ttcccgtgatctcttagtggca 77
Query: 75 tc 76
||
Sbjct: 78 tc 79
>37761_tca-mir-263a:mirbase
Length = 91
Score = 52.0 bits (26), Expect = 7e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 16 aatggcactggaagaattcacggggt 41
||||||||||||||||||||||||||
Sbjct: 18 aatggcactggaagaattcacggggt 43
>37762_tca-mir-263a:mirbase
Length = 91
Score = 52.0 bits (26), Expect = 7e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 16 aatggcactggaagaattcacggggt 41
||||||||||||||||||||||||||
Sbjct: 18 aatggcactggaagaattcacggggt 43
>35202_aae-mir-263a:mirbase
Length = 97
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 15 taatggcactggaagaattcacggg 39
|||||||||||||||||||||||||
Sbjct: 13 taatggcactggaagaattcacggg 37
>35297_aga-mir-263:mirbase
Length = 86
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 15 taatggcactggaagaattcacggg 39
|||||||||||||||||||||||||
Sbjct: 13 taatggcactggaagaattcacggg 37
>35377_ame-mir-263:mirbase
Length = 91
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 16 aatggcactggaagaattcacgggg 40
|||||||||||||||||||||||||
Sbjct: 16 aatggcactggaagaattcacgggg 40
>36030_cqu-mir-263:mirbase
Length = 76
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 15 taatggcactggaagaattcacggg 39
|||||||||||||||||||||||||
Sbjct: 8 taatggcactggaagaattcacggg 32
>35019_dpu-mir-263a:mirbase
Length = 101
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 16 aatggcactggaagaattcacggg 39
||||||||||||||||||||||||
Sbjct: 20 aatggcactggaagaattcacggg 43
>35073_api-mir-263a:mirbase
Length = 66
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 16 aatggcactggaagaattcacggggtac 43
|||||||||| |||||||||||||||||
Sbjct: 1 aatggcactgaaagaattcacggggtac 28
>38872_lgi-mir-183:mirbase
Length = 101
Score = 42.1 bits (21), Expect = 7e-05
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 10 acagttaatggcactggaagaattcacgg 38
||||| ||||||||||| |||||||||||
Sbjct: 15 acagtgaatggcactggtagaattcacgg 43
