miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00706;mir-263;AAPQ01006581.1/272485-272396 7220:Drosophila
erecta
Length = 90
Score = 157 bits (79), Expect = 3e-38
Identities = 82/83 (98%)
Strand = Plus / Plus
Query: 2 gctgactttgagtcttggcactgggagaattcacagttgactttattattctgtggttct 61
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 3 gctgactttgagtcttggcactgggagaattcacagttgattttattattctgtggttct 62
Query: 62 gcgggtgccaaaatttaatcaac 84
|||||||||||||||||||||||
Sbjct: 63 gcgggtgccaaaatttaatcaac 85
>RF00706;mir-263;AAKO01000155.1/113509-113420 7238:Drosophila
sechellia
Length = 90
Score = 141 bits (71), Expect = 2e-33
Identities = 77/79 (97%)
Strand = Plus / Plus
Query: 1 tgctgactttgagtcttggcactgggagaattcacagttgactttattattctgtggttc 60
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 2 tgctgactttgagtcttggcactgggagaattcacagttgacttgattattctgtggttc 61
Query: 61 tgcgggtgccaaaatttaa 79
|||||||||||||| ||||
Sbjct: 62 tgcgggtgccaaaacttaa 80
>RF00706;mir-263;AAPP01019315.1/707685-707774 7217:Drosophila
ananassae
Length = 90
Score = 127 bits (64), Expect = 3e-29
Identities = 73/76 (96%)
Strand = Plus / Plus
Query: 1 tgctgactttgagtcttggcactgggagaattcacagttgactttattattctgtggttc 60
||||| |||||| |||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 2 tgctgtctttgaatcttggcactgggagaattcacagttgattttattattctgtggttc 61
Query: 61 tgcgggtgccaaaatt 76
||||||||||||||||
Sbjct: 62 tgcgggtgccaaaatt 77
>RF00706;mir-263;AAQB01006546.1/140884-140979 7260:Drosophila
willistoni
Length = 96
Score = 77.8 bits (39), Expect = 2e-14
Identities = 65/72 (90%), Gaps = 5/72 (6%)
Strand = Plus / Plus
Query: 14 tcttggcactgggagaattcacagttgact-ttatt----attctgtggttctgcgggtg 68
|||||||||||||||||||||||||||| | ||||| ||||||||||||||||||||
Sbjct: 15 tcttggcactgggagaattcacagttgattcttattcgatattctgtggttctgcgggtg 74
Query: 69 ccaaaatttaat 80
||||||| ||||
Sbjct: 75 ccaaaatctaat 86
>RF00706;mir-263;AANI01017489.1/74722-74633 7244:Drosophila
virilis
Length = 90
Score = 75.8 bits (38), Expect = 8e-14
Identities = 62/69 (89%), Gaps = 2/69 (2%)
Strand = Plus / Plus
Query: 14 tcttggcactgggagaattcacagttgactttat--tattctgtggttctgcgggtgcca 71
||||||||||||||||||||||||| || | || ||||||||||||||||||||||||
Sbjct: 14 tcttggcactgggagaattcacagtcgattacataatattctgtggttctgcgggtgcca 73
Query: 72 aaatttaat 80
|||| ||||
Sbjct: 74 aaatgtaat 82
>RF00706;mir-263;AAFS01001003.1/35414-35505 46245:Drosophila
pseudoobscura pseudoobscura
Length = 92
Score = 71.9 bits (36), Expect = 1e-12
Identities = 59/64 (92%), Gaps = 2/64 (3%)
Strand = Plus / Plus
Query: 14 tcttggcactgggagaattcacagttgacttt-at-tattctgtggttctgcgggtgcca 71
||||||||||||||||||||||||||| || || ||||||||||||||||||||||||
Sbjct: 15 tcttggcactgggagaattcacagttggtttccatatattctgtggttctgcgggtgcca 74
Query: 72 aaat 75
||||
Sbjct: 75 aaat 78
>RF00706;mir-263;ABKP02026803.1/39465-39371 377271:Anopheles
gambiae M
Length = 95
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 15 cttggcactgggagaattcacagt 38
||||||||||||||||||||||||
Sbjct: 16 cttggcactgggagaattcacagt 39
>RF00706;mir-263;AADK01025663.1/3361-3450 7091:Bombyx mori
(domestic silkworm)
Length = 90
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 15 cttggcactgggagaattcacag 37
|||||||||||||||||||||||
Sbjct: 16 cttggcactgggagaattcacag 38
>RF00706;mir-263;AAGE02001908.1/33266-33358 7159:Aedes aegypti
(yellow fever mosquito)
Length = 93
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 15 cttggcactgggagaattcacag 37
|||||||||||||||||||||||
Sbjct: 16 cttggcactgggagaattcacag 38
