miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>36194_der-mir-275:mirbase
Length = 90
Score = 176 bits (89), Expect = 2e-45
Identities = 89/89 (100%)
Strand = Plus / Plus
Query: 2 agtctcctaccttgcgcgctaatcagtgaccggggctggttttttatatacagtcaggta 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2 agtctcctaccttgcgcgctaatcagtgaccggggctggttttttatatacagtcaggta 61
Query: 62 cctgaagtagcgcgcgtggtgccagacat 90
|||||||||||||||||||||||||||||
Sbjct: 62 cctgaagtagcgcgcgtggtgccagacat 90
>36411_dme-mir-275:mirbase
Length = 98
Score = 168 bits (85), Expect = 4e-43
Identities = 88/89 (98%)
Strand = Plus / Plus
Query: 2 agtctcctaccttgcgcgctaatcagtgaccggggctggttttttatatacagtcaggta 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6 agtctcctaccttgcgcgctaatcagtgaccggggctggttttttatatacagtcaggta 65
Query: 62 cctgaagtagcgcgcgtggtgccagacat 90
||||||||||||||||||||| |||||||
Sbjct: 66 cctgaagtagcgcgcgtggtggcagacat 94
>36412_dme-mir-275:mirbase
Length = 98
Score = 168 bits (85), Expect = 4e-43
Identities = 88/89 (98%)
Strand = Plus / Plus
Query: 2 agtctcctaccttgcgcgctaatcagtgaccggggctggttttttatatacagtcaggta 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6 agtctcctaccttgcgcgctaatcagtgaccggggctggttttttatatacagtcaggta 65
Query: 62 cctgaagtagcgcgcgtggtgccagacat 90
||||||||||||||||||||| |||||||
Sbjct: 66 cctgaagtagcgcgcgtggtggcagacat 94
>37232_dsi-mir-275:mirbase
Length = 90
Score = 168 bits (85), Expect = 4e-43
Identities = 88/89 (98%)
Strand = Plus / Plus
Query: 2 agtctcctaccttgcgcgctaatcagtgaccggggctggttttttatatacagtcaggta 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2 agtctcctaccttgcgcgctaatcagtgaccggggctggttttttatatacagtcaggta 61
Query: 62 cctgaagtagcgcgcgtggtgccagacat 90
||||||||||||||||||||| |||||||
Sbjct: 62 cctgaagtagcgcgcgtggtggcagacat 90
>37154_dse-mir-275:mirbase
Length = 90
Score = 161 bits (81), Expect = 1e-40
Identities = 87/89 (97%)
Strand = Plus / Plus
Query: 2 agtctcctaccttgcgcgctaatcagtgaccggggctggttttttatatacagtcaggta 61
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 2 agtctcctaccttgcgcgctaatcagtgaccggggcttgttttttatatacagtcaggta 61
Query: 62 cctgaagtagcgcgcgtggtgccagacat 90
||||||||||||||||||||| |||||||
Sbjct: 62 cctgaagtagcgcgcgtggtggcagacat 90
>36116_dan-mir-275:mirbase
Length = 87
Score = 123 bits (62), Expect = 2e-29
Identities = 83/89 (93%), Gaps = 2/89 (2%)
Strand = Plus / Plus
Query: 2 agtctcctaccttgcgcgctaatcagtgaccggggctggttttttatatacagtcaggta 61
|||||||||||||||||||||||||||||||||||||||||||| | ||||||||||
Sbjct: 1 agtctcctaccttgcgcgctaatcagtgaccggggctggtttttgcaa--cagtcaggta 58
Query: 62 cctgaagtagcgcgcgtggtgccagacat 90
||||||||||||||||||||| |||||||
Sbjct: 59 cctgaagtagcgcgcgtggtggcagacat 87
>36868_dpe-mir-275:mirbase
Length = 89
Score = 119 bits (60), Expect = 4e-28
Identities = 81/88 (92%)
Strand = Plus / Plus
Query: 2 agtctcctaccttgcgcgctaatcagtgaccggggctggttttttatatacagtcaggta 61
||||||||||| |||||||||||||| |||||||||||||||||| | ||||||||||
Sbjct: 2 agtctcctaccatgcgcgctaatcagagaccggggctggttttttcactgcagtcaggta 61
Query: 62 cctgaagtagcgcgcgtggtgccagaca 89
|||||||||||||||||||||| |||||
Sbjct: 62 cctgaagtagcgcgcgtggtgctagaca 89
>36947_dps-mir-275:mirbase
Length = 90
Score = 119 bits (60), Expect = 4e-28
Identities = 81/88 (92%)
Strand = Plus / Plus
Query: 2 agtctcctaccttgcgcgctaatcagtgaccggggctggttttttatatacagtcaggta 61
||||||||||| |||||||||||||| |||||||||||||||||| | ||||||||||
Sbjct: 3 agtctcctaccatgcgcgctaatcagagaccggggctggttttttcactgcagtcaggta 62
Query: 62 cctgaagtagcgcgcgtggtgccagaca 89
|||||||||||||||||||||| |||||
Sbjct: 63 cctgaagtagcgcgcgtggtgctagaca 90
>37368_dvi-mir-275:mirbase
Length = 92
Score = 93.7 bits (47), Expect = 2e-20
Identities = 70/77 (90%), Gaps = 3/77 (3%)
Strand = Plus / Plus
Query: 9 taccttgcgcgctaatcagtgaccggggctggttttttatat---acagtcaggtacctg 65
|||| ||||||||||||||||||||||||||||||| ||| |||||||||||||||
Sbjct: 7 taccgtgcgcgctaatcagtgaccggggctggttttggttatcccacagtcaggtacctg 66
Query: 66 aagtagcgcgcgtggtg 82
|||||||||||||||||
Sbjct: 67 aagtagcgcgcgtggtg 83
>36791_dmo-mir-275:mirbase
Length = 92
Score = 91.7 bits (46), Expect = 8e-20
Identities = 71/77 (92%), Gaps = 3/77 (3%)
Strand = Plus / Plus
Query: 9 taccttgcgcgctaatcagtgaccggggctggtttt--ttatat-acagtcaggtacctg 65
|||| |||||||||||||||||||||||||||||| |||| | |||||||||||||||
Sbjct: 7 taccgtgcgcgctaatcagtgaccggggctggtttcgattatctcacagtcaggtacctg 66
Query: 66 aagtagcgcgcgtggtg 82
|||||||||||||||||
Sbjct: 67 aagtagcgcgcgtggtg 83
>36283_dgr-mir-275:mirbase
Length = 92
Score = 89.7 bits (45), Expect = 3e-19
Identities = 65/71 (91%), Gaps = 3/71 (4%)
Strand = Plus / Plus
Query: 15 gcgcgctaatcagtgaccggggctggttttttatat---acagtcaggtacctgaagtag 71
|||||||||||||||||||||||||||||| ||| |||||||||||||||||||||
Sbjct: 13 gcgcgctaatcagtgaccggggctggttttgattatcccacagtcaggtacctgaagtag 72
Query: 72 cgcgcgtggtg 82
|||||||||||
Sbjct: 73 cgcgcgtggtg 83
>37447_dwi-mir-275:mirbase
Length = 93
Score = 85.7 bits (43), Expect = 5e-18
Identities = 75/84 (89%), Gaps = 5/84 (5%)
Strand = Plus / Plus
Query: 3 gtctcctaccttgcgcgctaatcagtgaccggggctggtt--ttttat---atacagtca 57
||||| |||||||||||||||||||||||| |||||| | |||||| |||||||||
Sbjct: 1 gtctcttaccttgcgcgctaatcagtgaccagggctgagtaattttattcaatacagtca 60
Query: 58 ggtacctgaagtagcgcgcgtggt 81
||||||||||||||||||||||||
Sbjct: 61 ggtacctgaagtagcgcgcgtggt 84
>35204_aae-mir-275:mirbase
Length = 83
Score = 56.0 bits (28), Expect = 4e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 52 cagtcaggtacctgaagtagcgcgcgtg 79
||||||||||||||||||||||||||||
Sbjct: 53 cagtcaggtacctgaagtagcgcgcgtg 80
>36031_cqu-mir-275:mirbase
Length = 101
Score = 56.0 bits (28), Expect = 4e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 52 cagtcaggtacctgaagtagcgcgcgtg 79
||||||||||||||||||||||||||||
Sbjct: 59 cagtcaggtacctgaagtagcgcgcgtg 86
>35299_aga-mir-275:mirbase
Length = 95
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 52 cagtcaggtacctgaagtagcgcgcgt 78
|||||||||||||||||||||||||||
Sbjct: 58 cagtcaggtacctgaagtagcgcgcgt 84
>35379_ame-mir-275:mirbase
Length = 100
Score = 52.0 bits (26), Expect = 7e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 52 cagtcaggtacctgaagtagcgcgcg 77
||||||||||||||||||||||||||
Sbjct: 64 cagtcaggtacctgaagtagcgcgcg 89
>34979_isc-mir-275:mirbase
Length = 101
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 53 agtcaggtacctgaagtagcgcgcg 77
|||||||||||||||||||||||||
Sbjct: 59 agtcaggtacctgaagtagcgcgcg 83
>35021_dpu-mir-275:mirbase
Length = 103
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 53 agtcaggtacctgaagtagcgcgcg 77
|||||||||||||||||||||||||
Sbjct: 59 agtcaggtacctgaagtagcgcgcg 83
>35548_bmo-mir-275:mirbase
Length = 86
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 53 agtcaggtacctgaagtagcgcgcg 77
|||||||||||||||||||||||||
Sbjct: 49 agtcaggtacctgaagtagcgcgcg 73
>37586_ngi-mir-275:mirbase
Length = 71
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 53 agtcaggtacctgaagtagcgcgcg 77
|||||||||||||||||||||||||
Sbjct: 42 agtcaggtacctgaagtagcgcgcg 66
>37617_nlo-mir-275:mirbase
Length = 71
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 53 agtcaggtacctgaagtagcgcgcg 77
|||||||||||||||||||||||||
Sbjct: 42 agtcaggtacctgaagtagcgcgcg 66
>37659_nvi-mir-275:mirbase
Length = 94
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 53 agtcaggtacctgaagtagcgcgcg 77
|||||||||||||||||||||||||
Sbjct: 59 agtcaggtacctgaagtagcgcgcg 83
>37765_tca-mir-275:mirbase
Length = 71
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 53 agtcaggtacctgaagtagcgcgcg 77
|||||||||||||||||||||||||
Sbjct: 43 agtcaggtacctgaagtagcgcgcg 67
>37766_tca-mir-275:mirbase
Length = 71
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 53 agtcaggtacctgaagtagcgcgcg 77
|||||||||||||||||||||||||
Sbjct: 43 agtcaggtacctgaagtagcgcgcg 67
>35075_api-mir-275:mirbase
Length = 62
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 53 agtcaggtacctgaagtagcgcg 75
|||||||||||||||||||||||
Sbjct: 40 agtcaggtacctgaagtagcgcg 62
