miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00637;mir-276;AANI01017424.1/110847-110939 7244:Drosophila
virilis
Length = 93
Score = 147 bits (74), Expect = 3e-35
Identities = 86/89 (96%), Gaps = 2/89 (2%)
Strand = Plus / Plus
Query: 1 cctggtttttgccatcagcgaggtatagagttcctacgttca--ttataaactcgtagga 58
|||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct: 1 cctggtttttgccatcagcgaggtatagagttcctacgttcaatttatatactcgtagga 60
Query: 59 acttcataccgtgctcttggaagaccaaa 87
|||||||||||||||||||||||||||||
Sbjct: 61 acttcataccgtgctcttggaagaccaaa 89
>RF00637;mir-276;AE014296.4/10312890-10312983 7227:Drosophila
melanogaster (fruit fly)
Length = 94
Score = 85.7 bits (43), Expect = 8e-17
Identities = 68/75 (90%), Gaps = 1/75 (1%)
Strand = Plus / Plus
Query: 6 tttttgccatcagcgaggtatagagttcctacgttcat-tataaactcgtaggaacttca 64
||||| |||||||||||||||||||||||||||||| | ||| | |||||||||||| |
Sbjct: 8 tttttaccatcagcgaggtatagagttcctacgttcctatattcagtcgtaggaacttaa 67
Query: 65 taccgtgctcttgga 79
|||||||||||||||
Sbjct: 68 taccgtgctcttgga 82
>RF00637;mir-276;AADE01001409.1/12453-12359 46245:Drosophila
pseudoobscura pseudoobscura
Length = 95
Score = 77.8 bits (39), Expect = 2e-14
Identities = 63/70 (90%), Gaps = 2/70 (2%)
Strand = Plus / Plus
Query: 12 ccatcagcgaggtatagagttcctacgttcattat--aaactcgtaggaacttcataccg 69
|||||||||||||||||||||||||||| | ||| ||| |||||||||||| ||||||
Sbjct: 14 ccatcagcgaggtatagagttcctacgtgccgtatccaaagtcgtaggaacttaataccg 73
Query: 70 tgctcttgga 79
||||||||||
Sbjct: 74 tgctcttgga 83
>RF00637;mir-276;ABLF01003513.1/4658-4754 7029:Acyrthosiphon pisum
(pea aphid)
Length = 97
Score = 69.9 bits (35), Expect = 5e-12
Identities = 62/70 (88%), Gaps = 7/70 (10%)
Strand = Plus / Plus
Query: 17 agcgaggtatagagttcctacgttca--ttataaa-----ctcgtaggaacttcataccg 69
|||||||||||||||||||||||||| |||| || ||||||||||||||||||||
Sbjct: 16 agcgaggtatagagttcctacgttcaaattattaatgttactcgtaggaacttcataccg 75
Query: 70 tgctcttgga 79
||||||||||
Sbjct: 76 tgctcttgga 85
>RF00637;mir-276;AAGE02007617.1/38970-39063 7159:Aedes aegypti
(yellow fever mosquito)
Length = 94
Score = 69.9 bits (35), Expect = 5e-12
Identities = 64/73 (87%), Gaps = 3/73 (4%)
Strand = Plus / Plus
Query: 9 ttgccatcagcgaggtatagagttcctacgttcattat---aaactcgtaggaacttcat 65
|||||||||||||||||||||||||||||||| | | ||| | |||||||||||||
Sbjct: 9 ttgccatcagcgaggtatagagttcctacgttgcgtgtgcgaaattggtaggaacttcat 68
Query: 66 accgtgctcttgg 78
|||||||||||||
Sbjct: 69 accgtgctcttgg 81
>RF00637;mir-276;AAZO01003220.1/6657-6747 121224:Pediculus humanus
corporis (human body louse)
Length = 91
Score = 63.9 bits (32), Expect = 3e-10
Identities = 57/64 (89%), Gaps = 1/64 (1%)
Strand = Plus / Plus
Query: 16 cagcgaggtatagagttcctacgttcattataaactcgtaggaacttcataccgtgctct 75
|||||||||||||||||||||||| | || ||| |||||||||||||||||||||||
Sbjct: 16 cagcgaggtatagagttcctacgtgctttggttact-gtaggaacttcataccgtgctct 74
Query: 76 tgga 79
||||
Sbjct: 75 tgga 78
>RF00637;mir-276;ABKQ02021477.1/23012-22918 377270:Anopheles
gambiae S
Length = 95
Score = 63.9 bits (32), Expect = 3e-10
Identities = 65/74 (87%), Gaps = 4/74 (5%)
Strand = Plus / Plus
Query: 10 tgccatcagcgaggtatagagttcctacgttcat---tataaac-tcgtaggaacttcat 65
||||||||||||||||||||||||||||| | || | |||| | |||||||||||||
Sbjct: 10 tgccatcagcgaggtatagagttcctacggtaatcgattgaaactttgtaggaacttcat 69
Query: 66 accgtgctcttgga 79
||||||||||||||
Sbjct: 70 accgtgctcttgga 83
>RF00637;mir-276;AAPU01011641.1/29322-29227 7230:Drosophila
mojavensis
Length = 96
Score = 63.9 bits (32), Expect = 3e-10
Identities = 63/71 (88%), Gaps = 3/71 (4%)
Strand = Plus / Plus
Query: 12 ccatcagcgaggtatagagttcctacgttc--attataa-actcgtaggaacttcatacc 68
|||||||||||||||||||||||||||| | ||| || | |||||||||||| |||||
Sbjct: 14 ccatcagcgaggtatagagttcctacgtgcaaattgcaatagtcgtaggaacttaatacc 73
Query: 69 gtgctcttgga 79
|||||||||||
Sbjct: 74 gtgctcttgga 84
>RF00637;mir-276;AAZX01001999.1/5300-5391 7425:Nasonia vitripennis
(jewel wasp)
Length = 92
Score = 58.0 bits (29), Expect = 2e-08
Identities = 58/66 (87%), Gaps = 5/66 (7%)
Strand = Plus / Plus
Query: 16 cagcgaggtatagagttcctacgttcatt--ataaactcgtaggaacttcataccgtgct 73
|||||||||||||||||||||||| ||| | ||| |||||||||||||||||||||
Sbjct: 17 cagcgaggtatagagttcctacgtagatttcagaaa---gtaggaacttcataccgtgct 73
Query: 74 cttgga 79
||||||
Sbjct: 74 cttgga 79
>RF00637;mir-276;AADK01021256.1/890-979 7091:Bombyx mori (domestic
silkworm)
Length = 90
Score = 56.0 bits (28), Expect = 8e-08
Identities = 57/63 (90%), Gaps = 4/63 (6%)
Strand = Plus / Plus
Query: 17 agcgaggtatagagttcctacgttcattataa-actcgtaggaacttcataccgtgctct 75
||||||||||||||||||||||| || ||| ||| |||||||||||||||||||||||
Sbjct: 17 agcgaggtatagagttcctacgt--atgctaacact-gtaggaacttcataccgtgctct 73
Query: 76 tgg 78
|||
Sbjct: 74 tgg 76
>RF00637;mir-276;AADG05002822.1/76702-76793 7460:Apis mellifera
(honey bee)
Length = 92
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 53 gtaggaacttcataccgtgctcttgga 79
|||||||||||||||||||||||||||
Sbjct: 53 gtaggaacttcataccgtgctcttgga 79
>RF00637;mir-276;ABKP02026752.1/53325-53226 377271:Anopheles
gambiae M
Length = 100
Score = 54.0 bits (27), Expect = 3e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 49 actcgtaggaacttcataccgtgctcttgga 79
|||| ||||||||||||||||||||||||||
Sbjct: 58 actcataggaacttcataccgtgctcttgga 88
>RF00637;mir-276;ABKQ02021479.1/6963-6864 377270:Anopheles gambiae
S
Length = 100
Score = 54.0 bits (27), Expect = 3e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 49 actcgtaggaacttcataccgtgctcttgga 79
|||| ||||||||||||||||||||||||||
Sbjct: 58 actcataggaacttcataccgtgctcttgga 88
>RF00637;mir-276;AAJJ01000143.1/58311-58223 7070:Tribolium
castaneum (red flour beetle)
Length = 89
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 53 gtaggaacttcataccgtgctcttgga 79
|||||||||||||||||||||||||||
Sbjct: 50 gtaggaacttcataccgtgctcttgga 76
>RF00637;mir-276;AAWU01010561.1/6178-6274 7176:Culex
quinquefasciatus (southern house mosquito)
Length = 97
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 54 taggaacttcataccgtgctcttgga 79
||||||||||||||||||||||||||
Sbjct: 60 taggaacttcataccgtgctcttgga 85
>RF00637;mir-276;AAGE02000417.1/11129-11035 7159:Aedes aegypti
(yellow fever mosquito)
Length = 95
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 54 taggaacttcataccgtgctcttgga 79
||||||||||||||||||||||||||
Sbjct: 58 taggaacttcataccgtgctcttgga 83
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 15 tcagcgaggtatagagttccta 36
||||||||||||||||||||||
Sbjct: 14 tcagcgaggtatagagttccta 35
