miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00637;mir-276;AE014296.4/10312890-10312983 7227:Drosophila
melanogaster (fruit fly)
Length = 94
Score = 163 bits (82), Expect = 5e-40
Identities = 91/93 (97%), Gaps = 2/93 (2%)
Strand = Plus / Plus
Query: 3 cgaagtctttttaccatcagcgaggtatagagttcctacgttcc--tattcagtcgtagg 60
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 1 cgaagtctttttaccatcagcgaggtatagagttcctacgttcctatattcagtcgtagg 60
Query: 61 aacttaataccgtgctcttggaggactgtcgac 93
|||||||||||||||||||||||||||||||||
Sbjct: 61 aacttaataccgtgctcttggaggactgtcgac 93
>RF00637;mir-276;AADE01001409.1/12453-12359 46245:Drosophila
pseudoobscura pseudoobscura
Length = 95
Score = 103 bits (52), Expect = 4e-22
Identities = 83/91 (91%), Gaps = 3/91 (3%)
Strand = Plus / Plus
Query: 3 cgaagtctttttaccatcagcgaggtatagagttcctacgttcc-tattc--agtcgtag 59
||||| || |||||||||||||||||||||||||||||||| || ||| | ||||||||
Sbjct: 1 cgaagcctctttaccatcagcgaggtatagagttcctacgtgccgtatccaaagtcgtag 60
Query: 60 gaacttaataccgtgctcttggaggactgtc 90
||||||||||||||||||||||||| |||||
Sbjct: 61 gaacttaataccgtgctcttggagggctgtc 91
>RF00637;mir-276;AAPU01011641.1/29322-29227 7230:Drosophila
mojavensis
Length = 96
Score = 99.6 bits (50), Expect = 6e-21
Identities = 84/95 (88%), Gaps = 4/95 (4%)
Strand = Plus / Plus
Query: 3 cgaagtctttttaccatcagcgaggtatagagttcctacgttcctattc----agtcgta 58
|||||||| | |||||||||||||||||||||||||||||| | ||| |||||||
Sbjct: 1 cgaagtctatataccatcagcgaggtatagagttcctacgtgcaaattgcaatagtcgta 60
Query: 59 ggaacttaataccgtgctcttggaggactgtcgac 93
|||||||||||||||||||||||||| ||||||||
Sbjct: 61 ggaacttaataccgtgctcttggagggctgtcgac 95
>RF00637;mir-276;AANI01017424.1/110847-110939 7244:Drosophila
virilis
Length = 93
Score = 75.8 bits (38), Expect = 9e-14
Identities = 67/76 (88%), Gaps = 3/76 (3%)
Strand = Plus / Plus
Query: 10 tttttaccatcagcgaggtatagagttcctacgttc---ctattcagtcgtaggaactta 66
||||| |||||||||||||||||||||||||||||| ||| | ||||||||||||
Sbjct: 6 tttttgccatcagcgaggtatagagttcctacgttcaatttatatactcgtaggaacttc 65
Query: 67 ataccgtgctcttgga 82
||||||||||||||||
Sbjct: 66 ataccgtgctcttgga 81
>RF00637;mir-276;AAJJ01000143.1/58311-58223 7070:Tribolium
castaneum (red flour beetle)
Length = 89
Score = 60.0 bits (30), Expect = 5e-09
Identities = 54/62 (87%)
Strand = Plus / Plus
Query: 21 agcgaggtatagagttcctacgttcctattcagtcgtaggaacttaataccgtgctcttg 80
||||||||||||||||||||||| | ||| | |||||||||| ||||||||||||||
Sbjct: 15 agcgaggtatagagttcctacgtgatttttcggctgtaggaacttcataccgtgctcttg 74
Query: 81 ga 82
||
Sbjct: 75 ga 76
>RF00637;mir-276;AAGE02007617.1/38970-39063 7159:Aedes aegypti
(yellow fever mosquito)
Length = 94
Score = 58.0 bits (29), Expect = 2e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 16 ccatcagcgaggtatagagttcctacgtt 44
|||||||||||||||||||||||||||||
Sbjct: 12 ccatcagcgaggtatagagttcctacgtt 40
>RF00637;mir-276;ABKQ02021477.1/23012-22918 377270:Anopheles
gambiae S
Length = 95
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 16 ccatcagcgaggtatagagttcctacg 42
|||||||||||||||||||||||||||
Sbjct: 12 ccatcagcgaggtatagagttcctacg 38
Score = 46.1 bits (23), Expect = 8e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 56 gtaggaacttaataccgtgctcttgga 82
|||||||||| ||||||||||||||||
Sbjct: 57 gtaggaacttcataccgtgctcttgga 83
>RF00637;mir-276;ABLF01003513.1/4658-4754 7029:Acyrthosiphon pisum
(pea aphid)
Length = 97
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 21 agcgaggtatagagttcctacgttc 45
|||||||||||||||||||||||||
Sbjct: 16 agcgaggtatagagttcctacgttc 40
Score = 50.1 bits (25), Expect = 5e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 54 tcgtaggaacttaataccgtgctcttgga 82
|||||||||||| ||||||||||||||||
Sbjct: 57 tcgtaggaacttcataccgtgctcttgga 85
>RF00637;mir-276;AAZO01003220.1/6657-6747 121224:Pediculus humanus
corporis (human body louse)
Length = 91
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 20 cagcgaggtatagagttcctacgt 43
||||||||||||||||||||||||
Sbjct: 16 cagcgaggtatagagttcctacgt 39
Score = 46.1 bits (23), Expect = 8e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 56 gtaggaacttaataccgtgctcttgga 82
|||||||||| ||||||||||||||||
Sbjct: 52 gtaggaacttcataccgtgctcttgga 78
>RF00637;mir-276;AAZX01001999.1/5300-5391 7425:Nasonia vitripennis
(jewel wasp)
Length = 92
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 20 cagcgaggtatagagttcctacgt 43
||||||||||||||||||||||||
Sbjct: 17 cagcgaggtatagagttcctacgt 40
>RF00637;mir-276;AADG05002822.1/76702-76793 7460:Apis mellifera
(honey bee)
Length = 92
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 20 cagcgaggtatagagttcctacgt 43
||||||||||||||||||||||||
Sbjct: 17 cagcgaggtatagagttcctacgt 40
>RF00637;mir-276;AADK01021256.1/890-979 7091:Bombyx mori (domestic
silkworm)
Length = 90
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 21 agcgaggtatagagttcctacgt 43
|||||||||||||||||||||||
Sbjct: 17 agcgaggtatagagttcctacgt 39
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 56 gtaggaacttaataccgtgctcttgg 81
|||||||||| |||||||||||||||
Sbjct: 51 gtaggaacttcataccgtgctcttgg 76
>RF00637;mir-276;AAWU01010561.1/6178-6274 7176:Culex
quinquefasciatus (southern house mosquito)
Length = 97
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 57 taggaacttaataccgtgctcttgga 82
||||||||| ||||||||||||||||
Sbjct: 60 taggaacttcataccgtgctcttgga 85
>RF00637;mir-276;AAGE02000417.1/11129-11035 7159:Aedes aegypti
(yellow fever mosquito)
Length = 95
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 19 tcagcgaggtatagagttccta 40
||||||||||||||||||||||
Sbjct: 14 tcagcgaggtatagagttccta 35
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 57 taggaacttaataccgtgctcttgga 82
||||||||| ||||||||||||||||
Sbjct: 58 taggaacttcataccgtgctcttgga 83
>RF00637;mir-276;ABKP02026752.1/53325-53226 377271:Anopheles
gambiae M
Length = 100
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 57 taggaacttaataccgtgctcttgga 82
||||||||| ||||||||||||||||
Sbjct: 63 taggaacttcataccgtgctcttgga 88
>RF00637;mir-276;ABKQ02021479.1/6963-6864 377270:Anopheles gambiae
S
Length = 100
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 57 taggaacttaataccgtgctcttgga 82
||||||||| ||||||||||||||||
Sbjct: 63 taggaacttcataccgtgctcttgga 88
