miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>36438_dme-mir-287:mirbase
Length = 93
Score = 117 bits (59), Expect = 1e-27
Identities = 65/67 (97%)
Strand = Plus / Plus
Query: 11 gggtctgaaattttgcacacatttacagtaattgtaaatgtgttgaaaatcgtttgcatg 70
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
Sbjct: 27 gggtctgaaattttgcacacatttacaataattgtaaatgtgttgaaaatcgtttgcacg 86
Query: 71 actgtga 77
|||||||
Sbjct: 87 actgtga 93
Score = 38.2 bits (19), Expect = 9e-04
Identities = 25/27 (92%)
Strand = Plus / Minus
Query: 27 acacatttacagtaattgtaaatgtgt 53
||||||||||| | |||||||||||||
Sbjct: 69 acacatttacaattattgtaaatgtgt 43
>36130_dan-mir-287:mirbase
Length = 73
Score = 111 bits (56), Expect = 7e-26
Identities = 59/60 (98%)
Strand = Plus / Plus
Query: 9 gtgggtctgaaattttgcacacatttacagtaattgtaaatgtgttgaaaatcgtttgca 68
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 7 gtgggtctgaaattttgcacacatttacaataattgtaaatgtgttgaaaatcgtttgca 66
Score = 38.2 bits (19), Expect = 9e-04
Identities = 25/27 (92%)
Strand = Plus / Minus
Query: 27 acacatttacagtaattgtaaatgtgt 53
||||||||||| | |||||||||||||
Sbjct: 51 acacatttacaattattgtaaatgtgt 25
>37168_dse-mir-287:mirbase
Length = 71
Score = 109 bits (55), Expect = 3e-25
Identities = 64/67 (95%)
Strand = Plus / Plus
Query: 11 gggtctgaaattttgcacacatttacagtaattgtaaatgtgttgaaaatcgtttgcatg 70
||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||| |
Sbjct: 5 gggtcggaaattttgcacacatttacaataattgtaaatgtgttgaaaatcgtttgcacg 64
Query: 71 actgtga 77
|||||||
Sbjct: 65 actgtga 71
Score = 38.2 bits (19), Expect = 9e-04
Identities = 25/27 (92%)
Strand = Plus / Minus
Query: 27 acacatttacagtaattgtaaatgtgt 53
||||||||||| | |||||||||||||
Sbjct: 47 acacatttacaattattgtaaatgtgt 21
>37244_dsi-mir-287:mirbase
Length = 71
Score = 109 bits (55), Expect = 3e-25
Identities = 64/67 (95%)
Strand = Plus / Plus
Query: 11 gggtctgaaattttgcacacatttacagtaattgtaaatgtgttgaaaatcgtttgcatg 70
||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||| |
Sbjct: 5 gggtcggaaattttgcacacatttacaataattgtaaatgtgttgaaaatcgtttgcacg 64
Query: 71 actgtga 77
|||||||
Sbjct: 65 actgtga 71
Score = 38.2 bits (19), Expect = 9e-04
Identities = 25/27 (92%)
Strand = Plus / Minus
Query: 27 acacatttacagtaattgtaaatgtgt 53
||||||||||| | |||||||||||||
Sbjct: 47 acacatttacaattattgtaaatgtgt 21
>36208_der-mir-287:mirbase
Length = 90
Score = 105 bits (53), Expect = 4e-24
Identities = 59/61 (96%)
Strand = Plus / Plus
Query: 14 tctgaaattttgcacacatttacagtaattgtaaatgtgttgaaaatcgtttgcatgact 73
|||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||
Sbjct: 27 tctgaaattttgcacacatttacaataattgtaaatgtgttgaaaatcgtttgcacgact 86
Query: 74 g 74
|
Sbjct: 87 g 87
Score = 38.2 bits (19), Expect = 9e-04
Identities = 25/27 (92%)
Strand = Plus / Minus
Query: 27 acacatttacagtaattgtaaatgtgt 53
||||||||||| | |||||||||||||
Sbjct: 66 acacatttacaattattgtaaatgtgt 40
>36962_dps-mir-287:mirbase
Length = 80
Score = 101 bits (51), Expect = 7e-23
Identities = 60/63 (95%)
Strand = Plus / Plus
Query: 15 ctgaaattttgcacacatttacagtaattgtaaatgtgttgaaaatcgtttgcatgactg 74
||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||
Sbjct: 18 ctgaaattttgcacacatttacaataattgtaaatgtgttgaaaatcgtttgcacaactg 77
Query: 75 tga 77
|||
Sbjct: 78 tga 80
Score = 38.2 bits (19), Expect = 9e-04
Identities = 25/27 (92%)
Strand = Plus / Minus
Query: 27 acacatttacagtaattgtaaatgtgt 53
||||||||||| | |||||||||||||
Sbjct: 56 acacatttacaattattgtaaatgtgt 30
>36881_dpe-mir-287:mirbase
Length = 75
Score = 99.6 bits (50), Expect = 3e-22
Identities = 53/54 (98%)
Strand = Plus / Plus
Query: 15 ctgaaattttgcacacatttacagtaattgtaaatgtgttgaaaatcgtttgca 68
||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 18 ctgaaattttgcacacatttacaataattgtaaatgtgttgaaaatcgtttgca 71
Score = 38.2 bits (19), Expect = 9e-04
Identities = 25/27 (92%)
Strand = Plus / Minus
Query: 27 acacatttacagtaattgtaaatgtgt 53
||||||||||| | |||||||||||||
Sbjct: 56 acacatttacaattattgtaaatgtgt 30
>36805_dmo-mir-287:mirbase
Length = 62
Score = 97.6 bits (49), Expect = 1e-21
Identities = 52/53 (98%)
Strand = Plus / Plus
Query: 16 tgaaattttgcacacatttacagtaattgtaaatgtgttgaaaatcgtttgca 68
|||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 7 tgaaattttgcacacatttacaataattgtaaatgtgttgaaaatcgtttgca 59
Score = 38.2 bits (19), Expect = 9e-04
Identities = 25/27 (92%)
Strand = Plus / Minus
Query: 27 acacatttacagtaattgtaaatgtgt 53
||||||||||| | |||||||||||||
Sbjct: 44 acacatttacaattattgtaaatgtgt 18
>37382_dvi-mir-287:mirbase
Length = 68
Score = 97.6 bits (49), Expect = 1e-21
Identities = 52/53 (98%)
Strand = Plus / Plus
Query: 16 tgaaattttgcacacatttacagtaattgtaaatgtgttgaaaatcgtttgca 68
|||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 13 tgaaattttgcacacatttacaataattgtaaatgtgttgaaaatcgtttgca 65
Score = 38.2 bits (19), Expect = 9e-04
Identities = 25/27 (92%)
Strand = Plus / Minus
Query: 27 acacatttacagtaattgtaaatgtgt 53
||||||||||| | |||||||||||||
Sbjct: 50 acacatttacaattattgtaaatgtgt 24
>37461_dwi-mir-287:mirbase
Length = 73
Score = 95.6 bits (48), Expect = 4e-21
Identities = 54/56 (96%)
Strand = Plus / Plus
Query: 13 gtctgaaattttgcacacatttacagtaattgtaaatgtgttgaaaatcgtttgca 68
||||||||||||||||||||||||| | ||||||||||||||||||||||||||||
Sbjct: 13 gtctgaaattttgcacacatttacaattattgtaaatgtgttgaaaatcgtttgca 68
Score = 46.1 bits (23), Expect = 3e-06
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 27 acacatttacagtaattgtaaatgtgt 53
||||||||||| |||||||||||||||
Sbjct: 53 acacatttacaataattgtaaatgtgt 27
>36298_dgr-mir-287-1:mirbase
Length = 73
Score = 91.7 bits (46), Expect = 7e-20
Identities = 58/62 (93%)
Strand = Plus / Plus
Query: 16 tgaaattttgcacacatttacagtaattgtaaatgtgttgaaaatcgtttgcatgactgt 75
|||||||||||||||||||||| || ||||||||||||||||||||||||||| |||||
Sbjct: 12 tgaaattttgcacacatttacaatatttgtaaatgtgttgaaaatcgtttgcacaactgt 71
Query: 76 ga 77
||
Sbjct: 72 ga 73
>36299_dgr-mir-287-2:mirbase
Length = 73
Score = 91.7 bits (46), Expect = 7e-20
Identities = 58/62 (93%)
Strand = Plus / Plus
Query: 16 tgaaattttgcacacatttacagtaattgtaaatgtgttgaaaatcgtttgcatgactgt 75
|||||||||||||||||||||| || ||||||||||||||||||||||||||| |||||
Sbjct: 12 tgaaattttgcacacatttacaatatttgtaaatgtgttgaaaatcgtttgcacaactgt 71
Query: 76 ga 77
||
Sbjct: 72 ga 73
