miRNEST 2.0, an integrative microRNA resource :: BLAST
>54930_zma-miR159a:pmrd
Length = 246
Score = 426 bits (215), Expect = e-120
Identities = 221/223 (99%)
Strand = Plus / Plus
Query: 2 gtttgaagcggagctcctatcattccaatgaagggtcgttccgaagggctggatccgctg 61
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 13 gtttgaagcggagctcctatcattccaatgaagggtcgttccgaagggctggttccgctg 72
Query: 62 ctcgttcatggttcccactatcctatctcatcatgtgtatatatgtaatccatgtgggag 121
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 73 ctcgttcatggttcccactatcctatctcatcatgtgtatatatgtaatccatgggggag 132
Query: 122 ggtttctctcgtctttgagataggcttgtggtttgcatgaccgaggagctgcaccgcccc 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 133 ggtttctctcgtctttgagataggcttgtggtttgcatgaccgaggagctgcaccgcccc 192
Query: 182 cttgctggccgctctttggattgaagggagctctgcatcctga 224
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 193 cttgctggccgctctttggattgaagggagctctgcatcctga 235
>54629_sof-miR159b:pmrd
Length = 266
Score = 180 bits (91), Expect = 3e-46
Identities = 94/95 (98%)
Strand = Plus / Plus
Query: 130 tcgtctttgagataggcttgtggtttgcatgaccgaggagctgcaccgcccccttgctgg 189
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 161 tcgtctttgagataggcttgtggtttgcatgaccgaggagctgcaccgtccccttgctgg 220
Query: 190 ccgctctttggattgaagggagctctgcatcctga 224
|||||||||||||||||||||||||||||||||||
Sbjct: 221 ccgctctttggattgaagggagctctgcatcctga 255
Score = 149 bits (75), Expect = 1e-36
Identities = 91/95 (95%), Gaps = 1/95 (1%)
Strand = Plus / Plus
Query: 3 tttgaagcggagctcctatcattccaatgaagggtcgttccgaagggctggatccgctgc 62
|||||||||||||||||||||||||||||||||| ||||| |||||| ||| ||||||||
Sbjct: 14 tttgaagcggagctcctatcattccaatgaagggccgttctgaaggg-tggttccgctgc 72
Query: 63 tcgttcatggttcccactatcctatctcatcatgt 97
|||||||||||||||||||||||||||||||||||
Sbjct: 73 tcgttcatggttcccactatcctatctcatcatgt 107
>54628_sof-miR159a:pmrd
Length = 265
Score = 180 bits (91), Expect = 3e-46
Identities = 94/95 (98%)
Strand = Plus / Plus
Query: 130 tcgtctttgagataggcttgtggtttgcatgaccgaggagctgcaccgcccccttgctgg 189
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 160 tcgtctttgagataggcttgtggtttgcatgaccgaggagctgcaccgtccccttgctgg 219
Query: 190 ccgctctttggattgaagggagctctgcatcctga 224
|||||||||||||||||||||||||||||||||||
Sbjct: 220 ccgctctttggattgaagggagctctgcatcctga 254
Score = 141 bits (71), Expect = 3e-34
Identities = 90/95 (94%), Gaps = 1/95 (1%)
Strand = Plus / Plus
Query: 3 tttgaagcggagctcctatcattccaatgaagggtcgttccgaagggctggatccgctgc 62
|||||||||||||||||||||||||||||||||| ||||| |||||| || ||||||||
Sbjct: 14 tttgaagcggagctcctatcattccaatgaagggccgttctgaagggttgt-tccgctgc 72
Query: 63 tcgttcatggttcccactatcctatctcatcatgt 97
|||||||||||||||||||||||||||||||||||
Sbjct: 73 tcgttcatggttcccactatcctatctcatcatgt 107
>54631_sof-miR159d:pmrd
Length = 265
Score = 157 bits (79), Expect = 4e-39
Identities = 91/95 (95%)
Strand = Plus / Plus
Query: 130 tcgtctttgagataggcttgtggtttgcatgaccgaggagctgcaccgcccccttgctgg 189
|||||| ||||||| ||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct: 160 tcgtctatgagatacgcttgtggtttgcatgaccgatgagctgcaccgtccccttgctgg 219
Query: 190 ccgctctttggattgaagggagctctgcatcctga 224
|||||||||||||||||||||||||||||||||||
Sbjct: 220 ccgctctttggattgaagggagctctgcatcctga 254
Score = 141 bits (71), Expect = 3e-34
Identities = 90/95 (94%), Gaps = 1/95 (1%)
Strand = Plus / Plus
Query: 3 tttgaagcggagctcctatcattccaatgaagggtcgttccgaagggctggatccgctgc 62
|||||||||||||||||||||||||||||||||| ||||| |||||| || ||||||||
Sbjct: 14 tttgaagcggagctcctatcattccaatgaagggccgttctgaagggttgt-tccgctgc 72
Query: 63 tcgttcatggttcccactatcctatctcatcatgt 97
|||||||||||||||||||||||||||||||||||
Sbjct: 73 tcgttcatggttcccactatcctatctcatcatgt 107
>54632_sof-miR159e:pmrd
Length = 264
Score = 149 bits (75), Expect = 1e-36
Identities = 91/95 (95%), Gaps = 1/95 (1%)
Strand = Plus / Plus
Query: 3 tttgaagcggagctcctatcattccaatgaagggtcgttccgaagggctggatccgctgc 62
|||||||||||||||||||||||||||||||||| ||||| |||||| ||| ||||||||
Sbjct: 13 tttgaagcggagctcctatcattccaatgaagggccgttctgaaggg-tggttccgctgc 71
Query: 63 tcgttcatggttcccactatcctatctcatcatgt 97
|||||||||||||||||||||||||||||||||||
Sbjct: 72 tcgttcatggttcccactatcctatctcatcatgt 106
Score = 147 bits (74), Expect = 4e-36
Identities = 83/86 (96%)
Strand = Plus / Plus
Query: 130 tcgtctttgagataggcttgtggtttgcatgaccgaggagctgcaccgcccccttgctgg 189
|||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct: 159 tcgtctttgagataggcttgtggtttgcatgaccgaagagctgcaccgtccccttgctgg 218
Query: 190 ccgctctttggattgaagggagctct 215
||||||||||||||||| ||||||||
Sbjct: 219 ccgctctttggattgaaaggagctct 244
>51338_pgl-miR159:pmrd
Length = 226
Score = 145 bits (73), Expect = 2e-35
Identities = 79/81 (97%)
Strand = Plus / Plus
Query: 136 ttgagataggcttgtggtttgcatgaccgaggagctgcaccgcccccttgctggccgctc 195
||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||
Sbjct: 146 ttgagataggcttgtggcttgcatgaccgaggagctgcaccgtccccttgctggccgctc 205
Query: 196 tttggattgaagggagctctg 216
|||||||||||||||||||||
Sbjct: 206 tttggattgaagggagctctg 226
Score = 77.8 bits (39), Expect = 3e-15
Identities = 72/83 (86%)
Strand = Plus / Plus
Query: 10 cggagctcctatcattccaatgaagggtcgttccgaagggctggatccgctgctcgttca 69
|||||||||||||||||||||||| ||| ||| ||| ||| | ||||||||||||
Sbjct: 1 cggagctcctatcattccaatgaaaggttgtttttgtgggttggtacagctgctcgttca 60
Query: 70 tggttcccactatcctatctcat 92
|||||||||||||||||||||||
Sbjct: 61 tggttcccactatcctatctcat 83
>54392_sar-miR159:pmrd
Length = 175
Score = 109 bits (55), Expect = 9e-25
Identities = 73/79 (92%)
Strand = Plus / Plus
Query: 138 gagataggcttgtggtttgcatgaccgaggagctgcaccgcccccttgctggccgctctt 197
||||||||| ||||| ||||||||||||||||| ||| || ||||| |||||||||||||
Sbjct: 97 gagataggcctgtggcttgcatgaccgaggagccgcatcgtcccctcgctggccgctctt 156
Query: 198 tggattgaagggagctctg 216
|||||||||||||||||||
Sbjct: 157 tggattgaagggagctctg 175
Score = 73.8 bits (37), Expect = 5e-14
Identities = 68/77 (88%), Gaps = 1/77 (1%)
Strand = Plus / Plus
Query: 11 ggagctcctatcattccaatgaagggtcgttcc-gaagggctggatccgctgctcgttca 69
||||||||||||||||||||||| |||| | | |||||| ||| | ||||||||||||
Sbjct: 2 ggagctcctatcattccaatgaaaggtcttgctagaaggggtggtacagctgctcgttca 61
Query: 70 tggttcccactatccta 86
|||||||||||||||||
Sbjct: 62 tggttcccactatccta 78
>54931_zma-miR159b:pmrd
Length = 221
Score = 105 bits (53), Expect = 1e-23
Identities = 77/85 (90%)
Strand = Plus / Plus
Query: 136 ttgagataggcttgtggtttgcatgaccgaggagctgcaccgcccccttgctggccgctc 195
||||||| |||||||||||||||||||||||||||||||| |||| | | || |||||
Sbjct: 122 ttgagatgggcttgtggtttgcatgaccgaggagctgcacgtccccttcgttgaccgctg 181
Query: 196 tttggattgaagggagctctgcatc 220
|||||||||||||||||||||||||
Sbjct: 182 tttggattgaagggagctctgcatc 206
Score = 58.0 bits (29), Expect = 3e-09
Identities = 35/37 (94%)
Strand = Plus / Plus
Query: 58 gctgctcgttcatggttcccactatcctatctcatca 94
||||||||||||||||||||||| ||| |||||||||
Sbjct: 68 gctgctcgttcatggttcccactgtcccatctcatca 104
>48820_osa-miR159b:pmrd
Length = 188
Score = 93.7 bits (47), Expect = 5e-20
Identities = 74/83 (89%)
Strand = Plus / Plus
Query: 138 gagataggcttgtggtttgcatgaccgaggagctgcaccgcccccttgctggccgctctt 197
|||||||||||||||||||||||||| |||||| | | | | |||||||| || |||||
Sbjct: 100 gagataggcttgtggtttgcatgaccaaggagccgaatcaactccttgctgaccactctt 159
Query: 198 tggattgaagggagctctgcatc 220
|||||||||||||||||||||||
Sbjct: 160 tggattgaagggagctctgcatc 182
Score = 54.0 bits (27), Expect = 5e-08
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 58 gctgctcgttcatggttcccactatcctatctcat 92
|||||| |||||||||||||||||| |||||||||
Sbjct: 58 gctgcttgttcatggttcccactattctatctcat 92
>54673_tae-miR159a:pmrd
Length = 177
Score = 87.7 bits (44), Expect = 3e-18
Identities = 71/80 (88%)
Strand = Plus / Plus
Query: 11 ggagctcctatcattccaatgaagggtcgttccgaagggctggatccgctgctcgttcat 70
|||||||||||||||||||||||||||| | |||||| | | | |||||||||||||
Sbjct: 3 ggagctcctatcattccaatgaagggtctaccggaagggtttgtgcagctgctcgttcat 62
Query: 71 ggttcccactatcctatctc 90
||||||||||||||||||||
Sbjct: 63 ggttcccactatcctatctc 82
Score = 83.8 bits (42), Expect = 5e-17
Identities = 72/82 (87%)
Strand = Plus / Plus
Query: 138 gagataggcttgtggtttgcatgaccgaggagctgcaccgcccccttgctggccgctctt 197
|||| |||| ||||||||||||||||||||||| || || |||| |||| ||||| ||
Sbjct: 96 gagagaggcctgtggtttgcatgaccgaggagccgcttcgatccctcgctgaccgctgtt 155
Query: 198 tggattgaagggagctctgcat 219
||||||||||||||||||||||
Sbjct: 156 tggattgaagggagctctgcat 177
>54934_zma-miR159e:pmrd
Length = 203
Score = 85.7 bits (43), Expect = 1e-17
Identities = 74/83 (89%), Gaps = 1/83 (1%)
Strand = Plus / Plus
Query: 136 ttgagataggcttgtggtttgcatgaccgaggagctgcaccgccccctt-gctggccgct 194
||||||| |||||||||||||||||||||||||||||| || |||||| | || |||||
Sbjct: 121 ttgagatgggcttgtggtttgcatgaccgaggagctgcctcgtccccttcgttgaccgct 180
Query: 195 ctttggattgaagggagctctgc 217
|||||| |||||||||||||||
Sbjct: 181 gtttggagtgaagggagctctgc 203
Score = 58.0 bits (29), Expect = 3e-09
Identities = 35/37 (94%)
Strand = Plus / Plus
Query: 58 gctgctcgttcatggttcccactatcctatctcatca 94
||||||||||||||||||||||| ||| |||||||||
Sbjct: 50 gctgctcgttcatggttcccactgtcccatctcatca 86
>48657_hvv-miR159b:pmrd
Length = 174
Score = 85.7 bits (43), Expect = 1e-17
Identities = 70/79 (88%)
Strand = Plus / Plus
Query: 138 gagataggcttgtggtttgcatgaccgaggagctgcaccgcccccttgctggccgctctt 197
|||||||||||||||||||||||| |||||||| || || |||| |||| ||||| ||
Sbjct: 96 gagataggcttgtggtttgcatgatcgaggagccgcttcgatccctcgctgaccgctgtt 155
Query: 198 tggattgaagggagctctg 216
|||||||||||||||||||
Sbjct: 156 tggattgaagggagctctg 174
Score = 79.8 bits (40), Expect = 8e-16
Identities = 70/80 (87%)
Strand = Plus / Plus
Query: 11 ggagctcctatcattccaatgaagggtcgttccgaagggctggatccgctgctcgttcat 70
|||||||||||||||||||||||||||| | |||||| | | | |||||| ||||||
Sbjct: 2 ggagctcctatcattccaatgaagggtctaccggaagggtttgtgcagctgcttgttcat 61
Query: 71 ggttcccactatcctatctc 90
||||||||||||||||||||
Sbjct: 62 ggttcccactatcctatctc 81
>54937_zma-miR159m:pmrd
Length = 457
Score = 58.0 bits (29), Expect = 3e-09
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 196 tttggattgaagggagctctgcatcctga 224
|||||||||||||||||||||||||||||
Sbjct: 1 tttggattgaagggagctctgcatcctga 29
>54653_spr-miR159:pmrd
Length = 392
Score = 58.0 bits (29), Expect = 3e-09
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 196 tttggattgaagggagctctgcatcctga 224
|||||||||||||||||||||||||||||
Sbjct: 1 tttggattgaagggagctctgcatcctga 29
>54674_tae-miR159b:pmrd
Length = 255
Score = 56.0 bits (28), Expect = 1e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 193 ctctttggattgaagggagctctgcatc 220
||||||||||||||||||||||||||||
Sbjct: 227 ctctttggattgaagggagctctgcatc 254
>48819_osa-miR159a:pmrd
Length = 272
Score = 56.0 bits (28), Expect = 1e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 193 ctctttggattgaagggagctctgcatc 220
||||||||||||||||||||||||||||
Sbjct: 239 ctctttggattgaagggagctctgcatc 266
>48796_oru-miR159:pmrd
Length = 274
Score = 56.0 bits (28), Expect = 1e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 193 ctctttggattgaagggagctctgcatc 220
||||||||||||||||||||||||||||
Sbjct: 239 ctctttggattgaagggagctctgcatc 266
>48656_hvv-miR159a:pmrd
Length = 303
Score = 50.1 bits (25), Expect = 7e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 196 tttggattgaagggagctctgcatc 220
|||||||||||||||||||||||||
Sbjct: 1 tttggattgaagggagctctgcatc 25
>48825_osa-miR159m:pmrd
Length = 249
Score = 48.1 bits (24), Expect = 3e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 193 ctctttggattgaagggagctctg 216
||||||||||||||||||||||||
Sbjct: 226 ctctttggattgaagggagctctg 249
>46932_ath-miR159b:pmrd
Length = 196
Score = 46.1 bits (23), Expect = 1e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 194 tctttggattgaagggagctctgcatc 220
|||||||||||||||||||||| ||||
Sbjct: 166 tctttggattgaagggagctcttcatc 192
>54378_pvu-miR159:pmrd
Length = 174
Score = 44.1 bits (22), Expect = 5e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 194 tctttggattgaagggagctct 215
||||||||||||||||||||||
Sbjct: 151 tctttggattgaagggagctct 172
>54377_pvu-miR159:pmrd
Length = 174
Score = 44.1 bits (22), Expect = 5e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 194 tctttggattgaagggagctct 215
||||||||||||||||||||||
Sbjct: 151 tctttggattgaagggagctct 172
>48699_mtr-miR159a:pmrd
Length = 168
Score = 44.1 bits (22), Expect = 5e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 194 tctttggattgaagggagctct 215
||||||||||||||||||||||
Sbjct: 146 tctttggattgaagggagctct 167
>48539_gma-miR159a:pmrd
Length = 214
Score = 44.1 bits (22), Expect = 5e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 194 tctttggattgaagggagctct 215
||||||||||||||||||||||
Sbjct: 173 tctttggattgaagggagctct 194
>48395_bra-miR159a:pmrd
Length = 185
Score = 44.1 bits (22), Expect = 5e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 194 tctttggattgaagggagctct 215
||||||||||||||||||||||
Sbjct: 161 tctttggattgaagggagctct 182
>48339_bna-miR159:pmrd
Length = 183
Score = 44.1 bits (22), Expect = 5e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 194 tctttggattgaagggagctct 215
||||||||||||||||||||||
Sbjct: 159 tctttggattgaagggagctct 180
>46931_ath-miR159a:pmrd
Length = 184
Score = 44.1 bits (22), Expect = 5e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 194 tctttggattgaagggagctct 215
||||||||||||||||||||||
Sbjct: 161 tctttggattgaagggagctct 182
>48701_mtr-miR159c:pmrd
Length = 44
Score = 42.1 bits (21), Expect = 2e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 196 tttggattgaagggagctctgcatc 220
|||||||||||||||||||| ||||
Sbjct: 1 tttggattgaagggagctctacatc 25
>54777_vvi-miR159c:pmrd
Length = 190
Score = 40.1 bits (20), Expect = 7e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 196 tttggattgaagggagctct 215
||||||||||||||||||||
Sbjct: 160 tttggattgaagggagctct 179
>54540_sly-miR159:pmrd
Length = 177
Score = 40.1 bits (20), Expect = 7e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 196 tttggattgaagggagctct 215
||||||||||||||||||||
Sbjct: 157 tttggattgaagggagctct 176
>52093_ptc-miRf10271-akr:pmrd
Length = 174
Score = 40.1 bits (20), Expect = 7e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 196 tttggattgaagggagctct 215
||||||||||||||||||||
Sbjct: 149 tttggattgaagggagctct 168
>51604_ptc-miR159c:pmrd
Length = 183
Score = 40.1 bits (20), Expect = 7e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 196 tttggattgaagggagctct 215
||||||||||||||||||||
Sbjct: 154 tttggattgaagggagctct 173
>51603_ptc-miR159b:pmrd
Length = 187
Score = 40.1 bits (20), Expect = 7e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 196 tttggattgaagggagctct 215
||||||||||||||||||||
Sbjct: 158 tttggattgaagggagctct 177
>51602_ptc-miR159a:pmrd
Length = 183
Score = 40.1 bits (20), Expect = 7e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 196 tttggattgaagggagctct 215
||||||||||||||||||||
Sbjct: 154 tttggattgaagggagctct 173
>48728_mtr-miR319b:pmrd
Length = 42
Score = 40.1 bits (20), Expect = 7e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 197 ttggattgaagggagctctgcatc 220
||||||||||||||||||| ||||
Sbjct: 1 ttggattgaagggagctctacatc 24
>48686_ltu-miR159:pmrd
Length = 345
Score = 40.1 bits (20), Expect = 7e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 196 tttggattgaagggagctct 215
||||||||||||||||||||
Sbjct: 1 tttggattgaagggagctct 20
