miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00679;mir-210;AAPT01021333.1/33432-33528 7222:Drosophila
grimshawi
Length = 97
Score = 79.8 bits (40), Expect = 3e-15
Identities = 59/63 (93%), Gaps = 3/63 (4%)
Strand = Plus / Plus
Query: 1 agctgctggacactgcacaagattagcgatt-aaaagactcttgtgcgtgtgacagcggc 59
||||||||| |||||||||||||||| ||| ||||||||||||||||||||||||||||
Sbjct: 15 agctgctggccactgcacaagattag--attcaaaagactcttgtgcgtgtgacagcggc 72
Query: 60 tat 62
|||
Sbjct: 73 tat 75
>RF00679;mir-210;AADG05000839.1/5125-5031 7460:Apis mellifera
(honey bee)
Length = 95
Score = 71.9 bits (36), Expect = 8e-13
Identities = 56/62 (90%), Gaps = 3/62 (4%)
Strand = Plus / Plus
Query: 1 agctgctggacactgcacaagattagcgattaaaagactcttgtgcgtgtgacagcggct 60
||||||||| |||||||||||||||| || |||||||||||||||||||||||||||
Sbjct: 15 agctgctggccactgcacaagattagacat---aagactcttgtgcgtgtgacagcggct 71
Query: 61 at 62
||
Sbjct: 72 at 73
>RF00679;mir-210;AAJJ01000173.1/48564-48466 7070:Tribolium
castaneum (red flour beetle)
Length = 99
Score = 67.9 bits (34), Expect = 1e-11
Identities = 55/62 (88%)
Strand = Plus / Plus
Query: 1 agctgctggacactgcacaagattagcgattaaaagactcttgtgcgtgtgacagcggct 60
||||||||||| |||||||||||||| ||| | ||||||||||||||||||||||||
Sbjct: 15 agctgctggacgctgcacaagattagatattttagaactcttgtgcgtgtgacagcggct 74
Query: 61 at 62
||
Sbjct: 75 at 76
>RF00679;mir-210;AANI01015309.1/4850-4756 7244:Drosophila virilis
Length = 95
Score = 61.9 bits (31), Expect = 8e-10
Identities = 56/62 (90%), Gaps = 3/62 (4%)
Strand = Plus / Plus
Query: 1 agctgctggacactgcacaagattagcgattaaaagactcttgtgcgtgtgacagcggct 60
||||||||| |||||||||||||||| | | || |||||||||||||||||||||||||
Sbjct: 15 agctgctggccactgcacaagattag--actcaa-gactcttgtgcgtgtgacagcggct 71
Query: 61 at 62
||
Sbjct: 72 at 73
>RF00679;mir-210;BABH01000454.1/26338-26435 7091:Bombyx mori
(domestic silkworm)
Length = 98
Score = 52.0 bits (26), Expect = 8e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 37 actcttgtgcgtgtgacagcggctat 62
||||||||||||||||||||||||||
Sbjct: 51 actcttgtgcgtgtgacagcggctat 76
>RF00679;mir-210;AAGE02019443.1/85298-85204 7159:Aedes aegypti
(yellow fever mosquito)
Length = 95
Score = 48.1 bits (24), Expect = 1e-05
Identities = 54/62 (87%), Gaps = 4/62 (6%)
Strand = Plus / Plus
Query: 1 agctgctggacactgcacaagattagcgattaaaagactcttgtgcgtgtgacagcggct 60
|||||||| |||||||||||||||| |||| ||||||||||||||||||| |||||
Sbjct: 15 agctgctgaccactgcacaagattag--attat--gactcttgtgcgtgtgacaacggct 70
Query: 61 at 62
||
Sbjct: 71 at 72
>RF00679;mir-210;ABJB010428283.1/1369-1447 6945:Ixodes scapularis
(black-legged tick)
Length = 79
Score = 48.1 bits (24), Expect = 1e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 39 tcttgtgcgtgtgacagcggctat 62
||||||||||||||||||||||||
Sbjct: 42 tcttgtgcgtgtgacagcggctat 65
>RF00679;mir-210;AAAB01008958.1/106879-106786 180454:Anopheles
gambiae str. PEST
Length = 94
Score = 46.1 bits (23), Expect = 5e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 36 gactcttgtgcgtgtgacagcggctat 62
||||||||||||||||||| |||||||
Sbjct: 46 gactcttgtgcgtgtgacaacggctat 72
