miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>54933_zma-miR159d:pmrd
Length = 217
Score = 359 bits (181), Expect = e-100
Identities = 193/197 (97%)
Strand = Plus / Plus
Query: 1 cgatcgatcgaagagctcccttcgatccaatccaggaggggaagtggtcggctgcagctg 60
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 11 cgatcgatcgaagagctcccttcgatccaatccaggagggaaagtggtcggctgcagctg 70
Query: 61 ccggttcatggatacctctctggtgcagcaatggccgagatgctcacctgcacttgcatg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71 ccggttcatggatacctctctggtgcagcaatggccgagatgctcacctgcacttgcatg 130
Query: 121 ggtgtgcatgacccgggagacgaacccaccatcatctttccctcgtgcttggattcaagg 180
|||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||
Sbjct: 131 ggtgtgcatgacccgggagacgaaccgaccatcatctttccctcgtgcttggattgaagg 190
Query: 181 gagctcctctctgtctc 197
|||||||||||| ||||
Sbjct: 191 gagctcctctctctctc 207
>54932_zma-miR159c:pmrd
Length = 217
Score = 293 bits (148), Expect = 3e-80
Identities = 184/194 (94%), Gaps = 4/194 (2%)
Strand = Plus / Plus
Query: 5 cgatcgaagagctcccttcgatccaatccaggaggggaagtggtcggctgcagctgccgg 64
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 15 cgatcgaagagctcccttcgatccaatccaggaggggaagtggtcggttgcagctgccgg 74
Query: 65 ttcatggatacctctctggtgcagcaatggccgagatgctcac--ctgcacttgcatggg 122
|||||||||||||||||||||||||||||||| | ||||||| |||||||||||||||
Sbjct: 75 ttcatggatacctctctggtgcagcaatggcc--gctgctcacctctgcacttgcatggg 132
Query: 123 tgtgcatgacccgggagacgaacccaccatcatctttccctcgtgcttggattcaaggga 182
|||||||||||||||||| || ||| ||||||||||||||||||||||||||| ||||||
Sbjct: 133 tgtgcatgacccgggagatgagcccgccatcatctttccctcgtgcttggattgaaggga 192
Query: 183 gctcctctctgtct 196
||||||||||||||
Sbjct: 193 gctcctctctgtct 206
>54630_sof-miR159c:pmrd
Length = 238
Score = 293 bits (148), Expect = 3e-80
Identities = 178/187 (95%), Gaps = 2/187 (1%)
Strand = Plus / Plus
Query: 6 gatcgaagagctcccttcgatccaatccaggaggggaagtggtcggctgcagctgccggt 65
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 39 gatcgaagagctcccttcgatccaatccaggaggggaagtggtcggttgcagctgccggt 98
Query: 66 tcatggatacctctctggtgcagcaatggccgagatgctcacctgcacttgcatgggtgt 125
|||||||| ||||||||||||||||||| | | |||||||||||||||||||||||||
Sbjct: 99 tcatggatgcctctctggtgcagcaatgactaa--tgctcacctgcacttgcatgggtgt 156
Query: 126 gcatgacccgggagacgaacccaccatcatctttccctcgtgcttggattcaagggagct 185
||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 157 gcatgacccgggagatgaacccaccatcatctttccctcgtgcttggattgaagggagct 216
Query: 186 cctctct 192
|||||||
Sbjct: 217 cctctct 223
>54403_sbi-miR159b:pmrd
Length = 253
Score = 291 bits (147), Expect = 1e-79
Identities = 174/182 (95%), Gaps = 2/182 (1%)
Strand = Plus / Plus
Query: 11 aagagctcccttcgatccaatccaggaggggaagtggtcggctgcagctgccggttcatg 70
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 59 aagagctcccttcgatccaatccaggaggggaagtggtcggttgcagctgccggttcatg 118
Query: 71 gatacctctctggtgcagcaatggccgagatgctcacctgcacttgcatgggtgtgcatg 130
||| ||||||||||||||||||| | || ||||||||||||||||||||||||||||||
Sbjct: 119 gatgcctctctggtgcagcaatgactga--tgctcacctgcacttgcatgggtgtgcatg 176
Query: 131 acccgggagacgaacccaccatcatctttccctcgtgcttggattcaagggagctcctct 190
|||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 177 acccgggagatgaacccaccatcatctttccctcgtgcttggattgaagggagctcctct 236
Query: 191 ct 192
||
Sbjct: 237 ct 238
>54643_sof-miR319b:pmrd
Length = 176
Score = 276 bits (139), Expect = 6e-75
Identities = 169/178 (94%), Gaps = 2/178 (1%)
Strand = Plus / Plus
Query: 11 aagagctcccttcgatccaatccaggaggggaagtggtcggctgcagctgccggttcatg 70
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 1 aagagctcccttcgatccaatccaggaggggaagtggtcggttgcagctgccggttcatg 60
Query: 71 gatacctctctggtgcagcaatggccgagatgctcacctgcacttgcatgggtgtgcatg 130
||| ||||||||||||||||||| | | ||||||||||||||||||||||||||||||
Sbjct: 61 gatgcctctctggtgcagcaatgactaa--tgctcacctgcacttgcatgggtgtgcatg 118
Query: 131 acccgggagacgaacccaccatcatctttccctcgtgcttggattcaagggagctcct 188
|||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 119 acccgggagatgaacccaccatcatctttccctcgtgcttggattgaagggagctcct 176
>54936_zma-miR159g:pmrd
Length = 180
Score = 270 bits (136), Expect = 4e-73
Identities = 172/182 (94%), Gaps = 4/182 (2%)
Strand = Plus / Plus
Query: 10 gaagagctcccttcgatccaatccaggaggggaagtggtcggctgcagctgccggttcat 69
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 1 gaagagctcccttcgatccaatccaggaggggaagtggtcggttgcagctgccggttcat 60
Query: 70 ggatacctctctggtgcagcaatggccgagatgctcac--ctgcacttgcatgggtgtgc 127
||||||||||||||||||||||||||| | ||||||| ||||||||||||||||||||
Sbjct: 61 ggatacctctctggtgcagcaatggcc--gctgctcacctctgcacttgcatgggtgtgc 118
Query: 128 atgacccgggagacgaacccaccatcatctttccctcgtgcttggattcaagggagctcc 187
||||||||||||| || ||| ||||||||||||||||||||||||||| |||||||||||
Sbjct: 119 atgacccgggagatgagcccgccatcatctttccctcgtgcttggattgaagggagctcc 178
Query: 188 tc 189
||
Sbjct: 179 tc 180
>55054_zma-miR319m:pmrd
Length = 178
Score = 266 bits (134), Expect = 6e-72
Identities = 170/180 (94%), Gaps = 4/180 (2%)
Strand = Plus / Plus
Query: 11 aagagctcccttcgatccaatccaggaggggaagtggtcggctgcagctgccggttcatg 70
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 1 aagagctcccttcgatccaatccaggaggggaagtggtcggttgcagctgccggttcatg 60
Query: 71 gatacctctctggtgcagcaatggccgagatgctcac--ctgcacttgcatgggtgtgca 128
|||||||||||||||||||||||||| | ||||||| |||||||||||||||||||||
Sbjct: 61 gatacctctctggtgcagcaatggcc--gctgctcacctctgcacttgcatgggtgtgca 118
Query: 129 tgacccgggagacgaacccaccatcatctttccctcgtgcttggattcaagggagctcct 188
|||||||||||| || ||| ||||||||||||||||||||||||||| ||||||||||||
Sbjct: 119 tgacccgggagatgagcccgccatcatctttccctcgtgcttggattgaagggagctcct 178
>54935_zma-miR159f:pmrd
Length = 181
Score = 232 bits (117), Expect = 8e-62
Identities = 169/183 (92%), Gaps = 5/183 (2%)
Strand = Plus / Plus
Query: 10 gaagagctcccttcgatccaatccagg-aggggaagtggtcggctgcagctgccggttca 68
||||||||||||||||||||||||||| |||||||||| |||| ||||||||||||||||
Sbjct: 1 gaagagctcccttcgatccaatccagggaggggaagtgttcggttgcagctgccggttca 60
Query: 69 tggatacctctctggtgcagcaatggccgagatgctcac--ctgcacttgcatgggtgtg 126
||||||| |||||||||||||||||||| | |||||| |||||||||||||||||||
Sbjct: 61 tggatacttctctggtgcagcaatggcc--gcagctcacctctgcacttgcatgggtgtg 118
Query: 127 catgacccgggagacgaacccaccatcatctttccctcgtgcttggattcaagggagctc 186
|||||||||||||| || ||| ||||||||||||||||||||||||||| ||||||||||
Sbjct: 119 catgacccgggagatgagcccgccatcatctttccctcgtgcttggattgaagggagctc 178
Query: 187 ctc 189
|||
Sbjct: 179 ctc 181
>48824_osa-miR159f:pmrd
Length = 188
Score = 113 bits (57), Expect = 5e-26
Identities = 146/174 (83%), Gaps = 10/174 (5%)
Strand = Plus / Plus
Query: 13 gagctcccttcgatccaatccaggaggggaagtggtcggctgcagctgccggttcatgga 72
|||||||||||||||||||||||||| ||||||||| || ||||||||||||||||||||
Sbjct: 13 gagctcccttcgatccaatccaggagaggaagtggtaggatgcagctgccggttcatgga 72
Query: 73 tacctctctggtgcagcaatggccgagatgctcacctgcacttgcatgggtgtgcatgac 132
||||||| |||| ||| | || ||| ||||||||||||||| ||||||||
Sbjct: 73 tacctctgcagtgc----atgtcgtag--gct----tgcacttgcatgggtttgcatgac 122
Query: 133 ccgggagacgaacccaccatcatctttccctcgtgcttggattcaagggagctc 186
|||||||| ||||||||||| |||| | || |||||||||| ||||||||||
Sbjct: 123 ccgggagatgaacccaccattgtcttcctcttatgcttggattgaagggagctc 176
>48821_osa-miR159c:pmrd
Length = 197
Score = 101 bits (51), Expect = 2e-22
Identities = 147/178 (82%), Gaps = 7/178 (3%)
Strand = Plus / Plus
Query: 13 gagctcccttcgatccaatccaggaggggaagtggtcggctgcagctgccggttcatgga 72
||||||| ||||||||||| |||||| ||||||||| || ||||||||||| ||||||||
Sbjct: 13 gagctcctttcgatccaattcaggagaggaagtggtaggatgcagctgccgattcatgga 72
Query: 73 tacctctctggtgcagcaatggccgagatgct---cacctgcacttgcatgggtgtgcat 129
||||||| |||| ||||| | ||||| ||||||||||||||||| |||||
Sbjct: 73 tacctctggagtgc----atggcagcaatgctgtaggcctgcacttgcatgggtttgcat 128
Query: 130 gacccgggagacgaacccaccatcatctttccctcgtgcttggattcaagggagctcc 187
||||||||||| ||||||||||| |||| | || || ||||||| |||||||||||
Sbjct: 129 gacccgggagatgaacccaccattgtcttcctctattgattggattgaagggagctcc 186
>48823_osa-miR159e:pmrd
Length = 191
Score = 93.7 bits (47), Expect = 5e-20
Identities = 66/71 (92%), Gaps = 1/71 (1%)
Strand = Plus / Plus
Query: 10 gaagagctccctt-cgatccaatccaggaggggaagtggtcggctgcagctgccggttca 68
||||||||||||| ||||||||| |||||| ||||||||| || ||||||||||||||||
Sbjct: 10 gaagagctccctttcgatccaattcaggagaggaagtggtaggatgcagctgccggttca 69
Query: 69 tggatacctct 79
|||||||||||
Sbjct: 70 tggatacctct 80
>48822_osa-miR159d:pmrd
Length = 189
Score = 93.7 bits (47), Expect = 5e-20
Identities = 62/67 (92%)
Strand = Plus / Plus
Query: 13 gagctcccttcgatccaatccaggaggggaagtggtcggctgcagctgccggttcatgga 72
||||||| ||||||||||| |||||| ||||||||| || ||||||||||||||||||||
Sbjct: 13 gagctcctttcgatccaattcaggagaggaagtggtgggatgcagctgccggttcatgga 72
Query: 73 tacctct 79
|||||||
Sbjct: 73 tacctct 79
