miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>55050_zma-miR319b:pmrd
Length = 213
Score = 369 bits (186), Expect = e-103
Identities = 186/186 (100%)
Strand = Plus / Plus
Query: 1 gatggaagagagcgtccttcagtccactcaggggcggtgctagggtcgaattagctgccg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15 gatggaagagagcgtccttcagtccactcaggggcggtgctagggtcgaattagctgccg 74
Query: 61 actcattcacccacatgccaagcaaacggccatggaaaccagctttgcagatgagtgaat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75 actcattcacccacatgccaagcaaacggccatggaaaccagctttgcagatgagtgaat 134
Query: 121 gaagcgggaggtaaaagcttcgatctcgcaccgtctttgcttggactgaagggtgctccc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 135 gaagcgggaggtaaaagcttcgatctcgcaccgtctttgcttggactgaagggtgctccc 194
Query: 181 tcctcc 186
||||||
Sbjct: 195 tcctcc 200
>55052_zma-miR319d:pmrd
Length = 212
Score = 339 bits (171), Expect = 5e-94
Identities = 180/183 (98%)
Strand = Plus / Plus
Query: 1 gatggaagagagcgtccttcagtccactcaggggcggtgctagggtcgaattagctgccg 60
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 14 gatggaagagagcgtccttcagtccactcaggggcggtgctagggtcggattagctgccg 73
Query: 61 actcattcacccacatgccaagcaaacggccatggaaaccagctttgcagatgagtgaat 120
||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct: 74 actcattcacccacatgccaagcaaacggccatggaaacgagcttcgcagatgagtgaat 133
Query: 121 gaagcgggaggtaaaagcttcgatctcgcaccgtctttgcttggactgaagggtgctccc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134 gaagcgggaggtaaaagcttcgatctcgcaccgtctttgcttggactgaagggtgctccc 193
Query: 181 tcc 183
|||
Sbjct: 194 tcc 196
>54468_sbi-miR319:pmrd
Length = 249
Score = 327 bits (165), Expect = 2e-90
Identities = 184/190 (96%), Gaps = 4/190 (2%)
Strand = Plus / Plus
Query: 1 gatggaagagagcgtccttcagtccactcaggggcggtgctagggtcgaattagctgccg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27 gatggaagagagcgtccttcagtccactcaggggcggtgctagggtcgaattagctgccg 86
Query: 61 actcattcacccacatgccaagcaaacggccatggaaa----ccagctttgcagatgagt 116
|||||||||||||||||||||||||||||||||||||| | ||||||||||||||||
Sbjct: 87 actcattcacccacatgccaagcaaacggccatggaaacgagctagctttgcagatgagt 146
Query: 117 gaatgaagcgggaggtaaaagcttcgatctcgcaccgtctttgcttggactgaagggtgc 176
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 147 gaatgaagcgggaggtaaaagcttcgatctcgcaccatctttgcttggactgaagggtgc 206
Query: 177 tccctcctcc 186
||||||||||
Sbjct: 207 tccctcctcc 216
>55053_zma-miR319e:pmrd
Length = 173
Score = 319 bits (161), Expect = 4e-88
Identities = 170/173 (98%)
Strand = Plus / Plus
Query: 8 gagagcgtccttcagtccactcaggggcggtgctagggtcgaattagctgccgactcatt 67
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 1 gagagcgtccttcagtccactcaggggcggtgctagggtcggattagctgccgactcatt 60
Query: 68 cacccacatgccaagcaaacggccatggaaaccagctttgcagatgagtgaatgaagcgg 127
|||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct: 61 cacccacatgccaagcaaacggccatggaaacgagcttcgcagatgagtgaatgaagcgg 120
Query: 128 gaggtaaaagcttcgatctcgcaccgtctttgcttggactgaagggtgctccc 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gaggtaaaagcttcgatctcgcaccgtctttgcttggactgaagggtgctccc 173
>48915_osa-miR319b:pmrd
Length = 197
Score = 206 bits (104), Expect = 4e-54
Identities = 171/190 (90%), Gaps = 5/190 (2%)
Strand = Plus / Plus
Query: 1 gatggaagagagcgtccttcagtccactcaggggcggtgctagggtcgaattagctgccg 60
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 5 gatggaagagagcgtccttcagtccactcatgggcggtgctagggtcgaattagctgccg 64
Query: 61 actcattcacccacatgccaagca--aacggccatggaaacc--agctttgcagatgagt 116
|||||||||||||||||||||||| || || || | | ||||| ||||||||||
Sbjct: 65 actcattcacccacatgccaagcaagaaacgcttgagatagcgaagcttagcagatgagt 124
Query: 117 gaatgaagcgggaggtaaaagcttcgatctcgcaccgtctttgcttggactgaagggtgc 176
|||||||||||||||| || | | ||||||||| ||||||||||||||||||||||||||
Sbjct: 125 gaatgaagcgggaggt-aacgttccgatctcgcgccgtctttgcttggactgaagggtgc 183
Query: 177 tccctcctcc 186
||||||||||
Sbjct: 184 tccctcctcc 193
>54844_vvi-miR319c:pmrd
Length = 182
Score = 58.0 bits (29), Expect = 2e-09
Identities = 56/65 (86%)
Strand = Plus / Plus
Query: 5 gaagagagcgtccttcagtccactcaggggcggtgctagggtcgaattagctgccgactc 64
||||||||| | |||||||||||||| ||| || |||| | |||||||||||||||||
Sbjct: 8 gaagagagctttcttcagtccactcatgggtggcagtaggattgaattagctgccgactc 67
Query: 65 attca 69
|||||
Sbjct: 68 attca 72
Score = 40.1 bits (20), Expect = 6e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 158 tgcttggactgaagggtgctccct 181
|||||||||||||||| |||||||
Sbjct: 148 tgcttggactgaagggagctccct 171
>51707_ptc-miR319a:pmrd
Length = 188
Score = 56.0 bits (28), Expect = 1e-08
Identities = 55/64 (85%)
Strand = Plus / Plus
Query: 6 aagagagcgtccttcagtccactcaggggcggtgctagggtcgaattagctgccgactca 65
|||||||| | |||||||||||||| ||| ||| |||| | |||||||||||||||||
Sbjct: 9 aagagagctttcttcagtccactcatgggtggtagtaggatttaattagctgccgactca 68
Query: 66 ttca 69
||||
Sbjct: 69 ttca 72
>54642_sof-miR319a:pmrd
Length = 539
Score = 52.0 bits (26), Expect = 2e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 161 ttggactgaagggtgctccctcctcc 186
||||||||||||||||||||||||||
Sbjct: 1 ttggactgaagggtgctccctcctcc 26
>51712_ptc-miR319f:pmrd
Length = 202
Score = 46.1 bits (23), Expect = 9e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 43 gggtcgaattagctgccgactcattca 69
|||| ||||||||||||||||||||||
Sbjct: 49 gggttgaattagctgccgactcattca 75
>51351_ppl-miR319:pmrd
Length = 204
Score = 44.1 bits (22), Expect = 4e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 48 gaattagctgccgactcattca 69
||||||||||||||||||||||
Sbjct: 53 gaattagctgccgactcattca 74
>48694_mma-miR159:pmrd
Length = 192
Score = 44.1 bits (22), Expect = 4e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 154 tctttgcttggactgaagggtgctccctcc 183
|||||| ||||||||||||| |||||||||
Sbjct: 154 tctttgattggactgaagggagctccctcc 183
>48573_gma-miR319b:pmrd
Length = 208
Score = 44.1 bits (22), Expect = 4e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 49 aattagctgccgactcattcacccacatgc 78
||||||||||||||||||||| ||| ||||
Sbjct: 63 aattagctgccgactcattcatccaaatgc 92
>55051_zma-miR319c:pmrd
Length = 216
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 161 ttggactgaagggtgctccct 181
|||||||||||||||||||||
Sbjct: 178 ttggactgaagggtgctccct 198
>55049_zma-miR319a:pmrd
Length = 209
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 161 ttggactgaagggtgctccct 181
|||||||||||||||||||||
Sbjct: 171 ttggactgaagggtgctccct 191
>54846_vvi-miR319f:pmrd
Length = 193
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 6 aagagagcgtccttcagtccactca 30
|||||||| ||||||||||||||||
Sbjct: 9 aagagagcttccttcagtccactca 33
Score = 42.1 bits (21), Expect = 1e-04
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 153 gtctttgcttggactgaagggtgctccct 181
|||| |||||||||||||||| |||||||
Sbjct: 154 gtctgtgcttggactgaagggagctccct 182
Score = 40.1 bits (20), Expect = 6e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 50 attagctgccgactcattca 69
||||||||||||||||||||
Sbjct: 54 attagctgccgactcattca 73
>54469_sbi-miR319b:pmrd
Length = 179
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 161 ttggactgaagggtgctccct 181
|||||||||||||||||||||
Sbjct: 158 ttggactgaagggtgctccct 178
>48914_osa-miR319a:pmrd
Length = 191
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 161 ttggactgaagggtgctccct 181
|||||||||||||||||||||
Sbjct: 162 ttggactgaagggtgctccct 182
>48572_gma-miR319a:pmrd
Length = 207
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 49 aattagctgccgactcattca 69
|||||||||||||||||||||
Sbjct: 62 aattagctgccgactcattca 82
Score = 40.1 bits (20), Expect = 6e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 107 gcagatgagtgaatgaagcgggag 130
|||||||||||||||| |||||||
Sbjct: 118 gcagatgagtgaatgatgcgggag 141
>48479_fal-miR159:pmrd
Length = 192
Score = 42.1 bits (21), Expect = 1e-04
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 154 tctttgcttggactgaagggtgctccctc 182
|||||| ||||||||||||| ||||||||
Sbjct: 154 tctttgattggactgaagggagctccctc 182
>48476_dso-miR159:pmrd
Length = 192
Score = 42.1 bits (21), Expect = 1e-04
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 154 tctttgcttggactgaagggtgctccctc 182
|||||| ||||||||||||| ||||||||
Sbjct: 154 tctttgattggactgaagggagctccctc 182
Score = 40.1 bits (20), Expect = 6e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 49 aattagctgccgactcattcacccacat 76
|||||||| |||||||||||| ||||||
Sbjct: 52 aattagcttccgactcattcatccacat 79
>48422_cor-miR159:pmrd
Length = 193
Score = 42.1 bits (21), Expect = 1e-04
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 154 tctttgcttggactgaagggtgctccctc 182
|||||| ||||||||||||| ||||||||
Sbjct: 155 tctttgattggactgaagggagctccctc 183
>48421_cmi-miR159:pmrd
Length = 193
Score = 42.1 bits (21), Expect = 1e-04
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 154 tctttgcttggactgaagggtgctccctc 182
|||||| ||||||||||||| ||||||||
Sbjct: 155 tctttgattggactgaagggagctccctc 183
>47656_ath-miRf10556-akr:pmrd
Length = 203
Score = 42.1 bits (21), Expect = 1e-04
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 154 tctttgcttggactgaagggtgctccctc 182
|||||| ||||||||||||| ||||||||
Sbjct: 44 tctttgattggactgaagggagctccctc 16
>46992_ath-miR319a:pmrd
Length = 176
Score = 42.1 bits (21), Expect = 1e-04
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 154 tctttgcttggactgaagggtgctccctc 182
|||||| ||||||||||||| ||||||||
Sbjct: 147 tctttgattggactgaagggagctccctc 175
>46856_ahi-miR159:pmrd
Length = 192
Score = 42.1 bits (21), Expect = 1e-04
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 154 tctttgcttggactgaagggtgctccctc 182
|||||| ||||||||||||| ||||||||
Sbjct: 154 tctttgattggactgaagggagctccctc 182
>46855_aha-miR159:pmrd
Length = 192
Score = 42.1 bits (21), Expect = 1e-04
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 154 tctttgcttggactgaagggtgctccctc 182
|||||| ||||||||||||| ||||||||
Sbjct: 154 tctttgattggactgaagggagctccctc 182
>46846_acb-miR159:pmrd
Length = 191
Score = 42.1 bits (21), Expect = 1e-04
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 154 tctttgcttggactgaagggtgctccctc 182
|||||| ||||||||||||| ||||||||
Sbjct: 153 tctttgattggactgaagggagctccctc 181
>52451_ptc-miRf10629-akr:pmrd
Length = 170
Score = 40.1 bits (20), Expect = 6e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 50 attagctgccgactcattca 69
||||||||||||||||||||
Sbjct: 42 attagctgccgactcattca 61
>51710_ptc-miR319d:pmrd
Length = 193
Score = 40.1 bits (20), Expect = 6e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 50 attagctgccgactcattca 69
||||||||||||||||||||
Sbjct: 54 attagctgccgactcattca 73
Score = 40.1 bits (20), Expect = 6e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 158 tgcttggactgaagggtgctccct 181
|||||||||||||||| |||||||
Sbjct: 162 tgcttggactgaagggagctccct 185
>51709_ptc-miR319c:pmrd
Length = 196
Score = 40.1 bits (20), Expect = 6e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 50 attagctgccgactcattca 69
||||||||||||||||||||
Sbjct: 54 attagctgccgactcattca 73
Score = 40.1 bits (20), Expect = 6e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 158 tgcttggactgaagggtgctccct 181
|||||||||||||||| |||||||
Sbjct: 165 tgcttggactgaagggagctccct 188
>48478_ech-miR159:pmrd
Length = 192
Score = 40.1 bits (20), Expect = 6e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 154 tctttgcttggactgaagggtgctccct 181
|||||| ||||||||||||| |||||||
Sbjct: 154 tctttgattggactgaagggagctccct 181
>48429_crb-miR159:pmrd
Length = 194
Score = 40.1 bits (20), Expect = 6e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 154 tctttgcttggactgaagggtgctccct 181
|||||| ||||||||||||| |||||||
Sbjct: 156 tctttgattggactgaagggagctccct 183
>46993_ath-miR319b:pmrd
Length = 172
Score = 40.1 bits (20), Expect = 6e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 158 tgcttggactgaagggtgctccct 181
|||||||||||||||| |||||||
Sbjct: 149 tgcttggactgaagggagctccct 172
