miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00638;MIR159;EU946960.1/247-441 4577:Zea mays
Length = 195
Score = 365 bits (184), Expect = e-100
Identities = 184/184 (100%)
Strand = Plus / Plus
Query: 3 tggaagagagcgtccttcagtccactcaggggcggtgctagggtcgaattagctgccgac 62
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6 tggaagagagcgtccttcagtccactcaggggcggtgctagggtcgaattagctgccgac 65
Query: 63 tcattcacccacatgccaagcaaacggccatggaaaccagctttgcagatgagtgaatga 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66 tcattcacccacatgccaagcaaacggccatggaaaccagctttgcagatgagtgaatga 125
Query: 123 agcgggaggtaaaagcttcgatctcgcaccgtctttgcttggactgaagggtgctccctc 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 126 agcgggaggtaaaagcttcgatctcgcaccgtctttgcttggactgaagggtgctccctc 185
Query: 183 ctcc 186
||||
Sbjct: 186 ctcc 189
>RF00638;MIR159;ABXC01001681.1/23904-24102 4558:Sorghum bicolor
(sorghum)
Length = 199
Score = 327 bits (165), Expect = 3e-89
Identities = 184/190 (96%), Gaps = 4/190 (2%)
Strand = Plus / Plus
Query: 1 gatggaagagagcgtccttcagtccactcaggggcggtgctagggtcgaattagctgccg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4 gatggaagagagcgtccttcagtccactcaggggcggtgctagggtcgaattagctgccg 63
Query: 61 actcattcacccacatgccaagcaaacggccatggaaa----ccagctttgcagatgagt 116
|||||||||||||||||||||||||||||||||||||| | ||||||||||||||||
Sbjct: 64 actcattcacccacatgccaagcaaacggccatggaaacgagctagctttgcagatgagt 123
Query: 117 gaatgaagcgggaggtaaaagcttcgatctcgcaccgtctttgcttggactgaagggtgc 176
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 124 gaatgaagcgggaggtaaaagcttcgatctcgcaccatctttgcttggactgaagggtgc 183
Query: 177 tccctcctcc 186
||||||||||
Sbjct: 184 tccctcctcc 193
>RF00638;MIR159;AACV01000479.1/66279-66476 39947:Oryza sativa
Japonica Group
Length = 198
Score = 206 bits (104), Expect = 8e-53
Identities = 171/190 (90%), Gaps = 5/190 (2%)
Strand = Plus / Plus
Query: 1 gatggaagagagcgtccttcagtccactcaggggcggtgctagggtcgaattagctgccg 60
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 4 gatggaagagagcgtccttcagtccactcatgggcggtgctagggtcgaattagctgccg 63
Query: 61 actcattcacccacatgccaagca--aacggccatggaaacc--agctttgcagatgagt 116
|||||||||||||||||||||||| || || || | | ||||| ||||||||||
Sbjct: 64 actcattcacccacatgccaagcaagaaacgcttgagatagcgaagcttagcagatgagt 123
Query: 117 gaatgaagcgggaggtaaaagcttcgatctcgcaccgtctttgcttggactgaagggtgc 176
|||||||||||||||| || | | ||||||||| ||||||||||||||||||||||||||
Sbjct: 124 gaatgaagcgggaggt-aacgttccgatctcgcgccgtctttgcttggactgaagggtgc 182
Query: 177 tccctcctcc 186
||||||||||
Sbjct: 183 tccctcctcc 192
>RF00638;MIR159;AY728409.1/1-184 3694:Populus trichocarpa
Length = 184
Score = 56.0 bits (28), Expect = 2e-07
Identities = 55/64 (85%)
Strand = Plus / Plus
Query: 6 aagagagcgtccttcagtccactcaggggcggtgctagggtcgaattagctgccgactca 65
|||||||| | |||||||||||||| ||| ||| |||| | |||||||||||||||||
Sbjct: 8 aagagagctttcttcagtccactcatgggtggtagtaggatttaattagctgccgactca 67
Query: 66 ttca 69
||||
Sbjct: 68 ttca 71
>RF00638;MIR159;AASG02019405.1/2563-2341 3988:Ricinus communis
(castor bean)
Length = 223
Score = 56.0 bits (28), Expect = 2e-07
Identities = 55/64 (85%)
Strand = Plus / Plus
Query: 6 aagagagcgtccttcagtccactcaggggcggtgctagggtcgaattagctgccgactca 65
|||||||| | |||||||||||||| ||| || | |||| | |||||||||||||||||
Sbjct: 9 aagagagctttcttcagtccactcatgggtggcggtaggatttaattagctgccgactca 68
Query: 66 ttca 69
||||
Sbjct: 69 ttca 72
>RF00638;MIR159;CU570967.5/92301-92498 3880:Medicago truncatula
(barrel medic)
Length = 198
Score = 50.1 bits (25), Expect = 1e-05
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 153 gtctttgcttggactgaagggtgctccct 181
||||||||||||||||||||| |||||||
Sbjct: 159 gtctttgcttggactgaagggagctccct 187
>RF00638;MIR159;CU459032.2/137942-137752 3880:Medicago truncatula
(barrel medic)
Length = 191
Score = 48.1 bits (24), Expect = 4e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 154 tctttgcttggactgaagggtgctccct 181
|||||||||||||||||||| |||||||
Sbjct: 153 tctttgcttggactgaagggagctccct 180
Score = 44.1 bits (22), Expect = 7e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 5 gaagagagcgtccttcagtccactca 30
||||||||| ||||||||||||||||
Sbjct: 8 gaagagagcttccttcagtccactca 33
>RF00638;MIR159;AM458581.1/27231-27413 29760:Vitis vinifera
Length = 183
Score = 48.1 bits (24), Expect = 4e-05
Identities = 51/60 (85%)
Strand = Plus / Plus
Query: 5 gaagagagcgtccttcagtccactcaggggcggtgctagggtcgaattagctgccgactc 64
||||||||| | |||||||||||||| ||| || |||| | |||||||||||||||||
Sbjct: 8 gaagagagctttcttcagtccactcatgggtggcagtaggattgaattagctgccgactc 67
>RF00638;MIR159;AARH01005879.1/28103-28306 3694:Populus
trichocarpa
Length = 204
Score = 46.1 bits (23), Expect = 2e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 43 gggtcgaattagctgccgactcattca 69
|||| ||||||||||||||||||||||
Sbjct: 48 gggttgaattagctgccgactcattca 74
>RF00638;MIR159;BABK01011373.1/1521-1344 34305:Lotus japonicus
Length = 178
Score = 44.1 bits (22), Expect = 7e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 49 aattagctgccgactcattcacccacatgc 78
||||||||||||||||||||| ||| ||||
Sbjct: 52 aattagctgccgactcattcatccaaatgc 81
