miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00073;mir-156;ABXC01006854.1/140253-140338 4558:Sorghum bicolor
(sorghum)
Length = 86
Score = 129 bits (65), Expect = 1e-29
Identities = 80/85 (94%)
Strand = Plus / Plus
Query: 31 ttgacagaagagagcgagcacctggcgcggcgaccggcatggaacgcatgcccgccccgc 90
|||||||||||||||||||||| ||||||||| |||||||||| |||||||| ||||||
Sbjct: 1 ttgacagaagagagcgagcacccggcgcggcggccggcatggagcgcatgccgtccccgc 60
Query: 91 cgcgtgctcgcttctctttctgtca 115
|||||||||||||||||||||||||
Sbjct: 61 cgcgtgctcgcttctctttctgtca 85
>RF00073;mir-156;CU406049.1/183-270 4529:Oryza rufipogon
Length = 88
Score = 54.0 bits (27), Expect = 5e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 85 ccccgccgcgtgctcgcttctctttctgtca 115
|||||||||||||||||| ||||||||||||
Sbjct: 57 ccccgccgcgtgctcgctcctctttctgtca 87
>RF00073;mir-156;ABXC01002449.1/27576-27491 4558:Sorghum bicolor
(sorghum)
Length = 86
Score = 50.1 bits (25), Expect = 8e-06
Identities = 70/85 (82%)
Strand = Plus / Plus
Query: 31 ttgacagaagagagcgagcacctggcgcggcgaccggcatggaacgcatgcccgccccgc 90
|||||||||||||| |||||| |||||| ||| |||||| | | ||| | || |||
Sbjct: 1 ttgacagaagagagtgagcacacggcgcgacgaacggcataatatgtatgtcgtcctcgc 60
Query: 91 cgcgtgctcgcttctctttctgtca 115
||||||||| |||||||||||||||
Sbjct: 61 cgcgtgctcacttctctttctgtca 85
