miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>37602_nlo-mir-8:mirbase
Length = 86
Score = 170 bits (86), Expect = 1e-43
Identities = 86/86 (100%)
Strand = Plus / Plus
Query: 1 ggagtatctgtttacatcttaccgggcagcattagattacatttgaattttctaatactg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ggagtatctgtttacatcttaccgggcagcattagattacatttgaattttctaatactg 60
Query: 61 tcaggtaaagatgtcgtcaggattcc 86
||||||||||||||||||||||||||
Sbjct: 61 tcaggtaaagatgtcgtcaggattcc 86
>35344_ame-mir-8:mirbase
Length = 85
Score = 107 bits (54), Expect = 1e-24
Identities = 79/86 (91%), Gaps = 1/86 (1%)
Strand = Plus / Plus
Query: 1 ggagtatctgtttacatcttaccgggcagcattagattacatttgaattttctaatactg 60
|||||||||||| ||||||||||||||||||||||||| | ||| | |||||||||||
Sbjct: 1 ggagtatctgttcacatcttaccgggcagcattagattgaagttg-accttctaatactg 59
Query: 61 tcaggtaaagatgtcgtcaggattcc 86
||||||||||||||||||||||||||
Sbjct: 60 tcaggtaaagatgtcgtcaggattcc 85
>37695_tca-mir-8:mirbase
Length = 73
Score = 95.6 bits (48), Expect = 5e-21
Identities = 63/68 (92%)
Strand = Plus / Plus
Query: 8 ctgtttacatcttaccgggcagcattagattacatttgaattttctaatactgtcaggta 67
||||| ||||||||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct: 2 ctgttaacatcttaccgggcagcattagattacattttatacttctaatactgtcaggta 61
Query: 68 aagatgtc 75
||||||||
Sbjct: 62 aagatgtc 69
>37696_tca-mir-8:mirbase
Length = 73
Score = 95.6 bits (48), Expect = 5e-21
Identities = 63/68 (92%)
Strand = Plus / Plus
Query: 8 ctgtttacatcttaccgggcagcattagattacatttgaattttctaatactgtcaggta 67
||||| ||||||||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct: 2 ctgttaacatcttaccgggcagcattagattacattttatacttctaatactgtcaggta 61
Query: 68 aagatgtc 75
||||||||
Sbjct: 62 aagatgtc 69
>35171_aae-mir-8:mirbase
Length = 79
Score = 77.8 bits (39), Expect = 1e-15
Identities = 67/74 (90%), Gaps = 3/74 (4%)
Strand = Plus / Plus
Query: 7 tctgtttacatcttaccgggcagcattagattacatttgaatt--ttctaatactgtcag 64
|||||| |||||||||||||||||||||||| | |||||| | |||||||||||||||
Sbjct: 2 tctgttcacatcttaccgggcagcattagat-atttttgaaatacttctaatactgtcag 60
Query: 65 gtaaagatgtcgtc 78
||||||||||||||
Sbjct: 61 gtaaagatgtcgtc 74
>36006_cqu-mir-8:mirbase
Length = 77
Score = 73.8 bits (37), Expect = 2e-14
Identities = 65/73 (89%), Gaps = 1/73 (1%)
Strand = Plus / Plus
Query: 7 tctgtttacatcttaccgggcagcattagattacatttgaatt-ttctaatactgtcagg 65
|||||| |||||||||||||||||||||||| ||| ||| ||||||||||||||||
Sbjct: 2 tctgttcacatcttaccgggcagcattagatattttttaaatacttctaatactgtcagg 61
Query: 66 taaagatgtcgtc 78
|||||||||||||
Sbjct: 62 taaagatgtcgtc 74
>36253_dgr-mir-8:mirbase
Length = 91
Score = 73.8 bits (37), Expect = 2e-14
Identities = 68/76 (89%), Gaps = 3/76 (3%)
Strand = Plus / Plus
Query: 6 atctgtttacatcttaccgggcagcattagat--tacatttgaat-tttctaatactgtc 62
||||||| |||||||||||||||||||||||| | |||| ||| |||||||||||||
Sbjct: 7 atctgttcacatcttaccgggcagcattagattcttgatttaaataattctaatactgtc 66
Query: 63 aggtaaagatgtcgtc 78
||||||||||||||||
Sbjct: 67 aggtaaagatgtcgtc 82
>37125_dse-mir-8:mirbase
Length = 87
Score = 73.8 bits (37), Expect = 2e-14
Identities = 65/73 (89%), Gaps = 1/73 (1%)
Strand = Plus / Plus
Query: 6 atctgtttacatcttaccgggcagcattagattacatttgaattttctaatactgtcagg 65
||||||| ||||||||||||||||||||||| | | ||| || |||||||||||||||
Sbjct: 7 atctgttcacatcttaccgggcagcattaga-tcctttttaaaactctaatactgtcagg 65
Query: 66 taaagatgtcgtc 78
|||||||||||||
Sbjct: 66 taaagatgtcgtc 78
>37339_dvi-mir-8:mirbase
Length = 91
Score = 73.8 bits (37), Expect = 2e-14
Identities = 68/76 (89%), Gaps = 3/76 (3%)
Strand = Plus / Plus
Query: 6 atctgtttacatcttaccgggcagcattagat--tacatttgaat-tttctaatactgtc 62
||||||| |||||||||||||||||||||||| | |||| ||| |||||||||||||
Sbjct: 7 atctgttcacatcttaccgggcagcattagattcttgatttaaataattctaatactgtc 66
Query: 63 aggtaaagatgtcgtc 78
||||||||||||||||
Sbjct: 67 aggtaaagatgtcgtc 82
>35518_bmo-mir-8:mirbase
Length = 102
Score = 65.9 bits (33), Expect = 4e-12
Identities = 58/65 (89%), Gaps = 1/65 (1%)
Strand = Plus / Plus
Query: 15 catcttaccgggcagcattagattacatttga-attttctaatactgtcaggtaaagatg 73
|||||||||||||||||||||| | | | | |||||||||||||||||||||||||||
Sbjct: 21 catcttaccgggcagcattagagtcctgtctatattttctaatactgtcaggtaaagatg 80
Query: 74 tcgtc 78
|||||
Sbjct: 81 tcgtc 85
>36087_dan-mir-8:mirbase
Length = 88
Score = 65.9 bits (33), Expect = 4e-12
Identities = 63/73 (86%)
Strand = Plus / Plus
Query: 6 atctgtttacatcttaccgggcagcattagattacatttgaattttctaatactgtcagg 65
||||||| |||||||||||||||||||||||| | ||| |||||||||||||||
Sbjct: 7 atctgttcacatcttaccgggcagcattagatcctttctgataactctaatactgtcagg 66
Query: 66 taaagatgtcgtc 78
|||||||||||||
Sbjct: 67 taaagatgtcgtc 79
>36165_der-mir-8:mirbase
Length = 87
Score = 65.9 bits (33), Expect = 4e-12
Identities = 64/73 (87%), Gaps = 1/73 (1%)
Strand = Plus / Plus
Query: 6 atctgtttacatcttaccgggcagcattagattacatttgaattttctaatactgtcagg 65
||||||| ||||||||||||||||||||||| | | ||| | |||||||||||||||
Sbjct: 7 atctgttcacatcttaccgggcagcattaga-tcctttttataactctaatactgtcagg 65
Query: 66 taaagatgtcgtc 78
|||||||||||||
Sbjct: 66 taaagatgtcgtc 78
>36345_dme-mir-8:mirbase
Length = 87
Score = 65.9 bits (33), Expect = 4e-12
Identities = 64/73 (87%), Gaps = 1/73 (1%)
Strand = Plus / Plus
Query: 6 atctgtttacatcttaccgggcagcattagattacatttgaattttctaatactgtcagg 65
||||||| ||||||||||||||||||||||| | | ||| | |||||||||||||||
Sbjct: 7 atctgttcacatcttaccgggcagcattaga-tcctttttataactctaatactgtcagg 65
Query: 66 taaagatgtcgtc 78
|||||||||||||
Sbjct: 66 taaagatgtcgtc 78
>36346_dme-mir-8:mirbase
Length = 87
Score = 65.9 bits (33), Expect = 4e-12
Identities = 64/73 (87%), Gaps = 1/73 (1%)
Strand = Plus / Plus
Query: 6 atctgtttacatcttaccgggcagcattagattacatttgaattttctaatactgtcagg 65
||||||| ||||||||||||||||||||||| | | ||| | |||||||||||||||
Sbjct: 7 atctgttcacatcttaccgggcagcattaga-tcctttttataactctaatactgtcagg 65
Query: 66 taaagatgtcgtc 78
|||||||||||||
Sbjct: 66 taaagatgtcgtc 78
>36763_dmo-mir-8:mirbase
Length = 90
Score = 65.9 bits (33), Expect = 4e-12
Identities = 67/76 (88%), Gaps = 3/76 (3%)
Strand = Plus / Plus
Query: 6 atctgtttacatcttaccgggcagcattagattac--atttgaat-tttctaatactgtc 62
||||||| ||||||||||||||||||||||||| | ||| ||| ||||||||||||
Sbjct: 6 atctgttcacatcttaccgggcagcattagattcctgttttaaataactctaatactgtc 65
Query: 63 aggtaaagatgtcgtc 78
||||||||||||||||
Sbjct: 66 aggtaaagatgtcgtc 81
>36836_dpe-mir-8:mirbase
Length = 87
Score = 65.9 bits (33), Expect = 4e-12
Identities = 64/73 (87%), Gaps = 1/73 (1%)
Strand = Plus / Plus
Query: 6 atctgtttacatcttaccgggcagcattagattacatttgaattttctaatactgtcagg 65
||||||| ||||||||||||||||||||||| | | || || |||||||||||||||
Sbjct: 7 atctgttcacatcttaccgggcagcattaga-tcctttagatacctctaatactgtcagg 65
Query: 66 taaagatgtcgtc 78
|||||||||||||
Sbjct: 66 taaagatgtcgtc 78
>36912_dps-mir-8:mirbase
Length = 87
Score = 65.9 bits (33), Expect = 4e-12
Identities = 64/73 (87%), Gaps = 1/73 (1%)
Strand = Plus / Plus
Query: 6 atctgtttacatcttaccgggcagcattagattacatttgaattttctaatactgtcagg 65
||||||| ||||||||||||||||||||||| | | || || |||||||||||||||
Sbjct: 7 atctgttcacatcttaccgggcagcattaga-tcctttagatacctctaatactgtcagg 65
Query: 66 taaagatgtcgtc 78
|||||||||||||
Sbjct: 66 taaagatgtcgtc 78
>37203_dsi-mir-8:mirbase
Length = 87
Score = 65.9 bits (33), Expect = 4e-12
Identities = 64/73 (87%), Gaps = 1/73 (1%)
Strand = Plus / Plus
Query: 6 atctgtttacatcttaccgggcagcattagattacatttgaattttctaatactgtcagg 65
||||||| ||||||||||||||||||||||| | | ||| | |||||||||||||||
Sbjct: 7 atctgttcacatcttaccgggcagcattaga-tcctttttataactctaatactgtcagg 65
Query: 66 taaagatgtcgtc 78
|||||||||||||
Sbjct: 66 taaagatgtcgtc 78
>37493_dya-mir-8:mirbase
Length = 87
Score = 65.9 bits (33), Expect = 4e-12
Identities = 64/73 (87%), Gaps = 1/73 (1%)
Strand = Plus / Plus
Query: 6 atctgtttacatcttaccgggcagcattagattacatttgaattttctaatactgtcagg 65
||||||| ||||||||||||||||||||||| | | ||| | |||||||||||||||
Sbjct: 7 atctgttcacatcttaccgggcagcattaga-tcctttttataactctaatactgtcagg 65
Query: 66 taaagatgtcgtc 78
|||||||||||||
Sbjct: 66 taaagatgtcgtc 78
>37561_lmi-mir-8:mirbase
Length = 61
Score = 65.9 bits (33), Expect = 4e-12
Identities = 54/61 (88%)
Strand = Plus / Plus
Query: 15 catcttaccgggcagcattagattacatttgaattttctaatactgtcaggtaaagatgt 74
|||||||||||||||||||||||| | ||| |||||||||||||||||||| |||||
Sbjct: 1 catcttaccgggcagcattagattgcgactgagatttctaatactgtcaggtaacgatgt 60
Query: 75 c 75
|
Sbjct: 61 c 61
>37414_dwi-mir-8:mirbase
Length = 92
Score = 63.9 bits (32), Expect = 2e-11
Identities = 66/77 (85%), Gaps = 4/77 (5%)
Strand = Plus / Plus
Query: 6 atctgtttacatcttaccgggcagcattagat----tacatttgaattttctaatactgt 61
||||||| |||||||||||||||||||||||| ||| | || | |||||||||||
Sbjct: 7 atctgttcacatcttaccgggcagcattagattttgtactatagatatctctaatactgt 66
Query: 62 caggtaaagatgtcgtc 78
|||||||||||||||||
Sbjct: 67 caggtaaagatgtcgtc 83
>35274_aga-mir-8:mirbase
Length = 86
Score = 61.9 bits (31), Expect = 7e-11
Identities = 64/74 (86%), Gaps = 2/74 (2%)
Strand = Plus / Plus
Query: 7 tctgtttacatcttaccgggcagcattagattacattt--gaattttctaatactgtcag 64
|||||| |||||||||||||||||||||||| | | || ||||||||||||||||
Sbjct: 6 tctgttcacatcttaccgggcagcattagatatgttatcggatatttctaatactgtcag 65
Query: 65 gtaaagatgtcgtc 78
||||||||||||||
Sbjct: 66 gtaaagatgtcgtc 79
>38851_lgi-mir-8:mirbase
Length = 98
Score = 58.0 bits (29), Expect = 1e-09
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 47 attttctaatactgtcaggtaaagatgtc 75
|||||||||||||||||||||||||||||
Sbjct: 55 attttctaatactgtcaggtaaagatgtc 83
>34963_isc-mir-8:mirbase
Length = 94
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 49 tttctaatactgtcaggtaaagatgtc 75
|||||||||||||||||||||||||||
Sbjct: 54 tttctaatactgtcaggtaaagatgtc 80
>34999_dpu-mir-8:mirbase
Length = 98
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 49 tttctaatactgtcaggtaaagatgtc 75
|||||||||||||||||||||||||||
Sbjct: 57 tttctaatactgtcaggtaaagatgtc 83
Score = 50.1 bits (25), Expect = 3e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 10 gtttacatcttaccgggcagcattagatt 38
|||| ||||||||||||||||||||||||
Sbjct: 5 gtttccatcttaccgggcagcattagatt 33
>38728_cte-mir-8:mirbase
Length = 98
Score = 52.0 bits (26), Expect = 6e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 50 ttctaatactgtcaggtaaagatgtc 75
||||||||||||||||||||||||||
Sbjct: 57 ttctaatactgtcaggtaaagatgtc 82
>38969_sja-mir-8:mirbase
Length = 76
Score = 50.1 bits (25), Expect = 3e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 45 gaattttctaatactgtcaggtaaagatg 73
||||||||||||||||| |||||||||||
Sbjct: 36 gaattttctaatactgttaggtaaagatg 64
>38968_sja-mir-8:mirbase
Length = 76
Score = 50.1 bits (25), Expect = 3e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 45 gaattttctaatactgtcaggtaaagatg 73
||||||||||||||||| |||||||||||
Sbjct: 36 gaattttctaatactgttaggtaaagatg 64
>35047_api-mir-8:mirbase
Length = 63
Score = 42.1 bits (21), Expect = 6e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 51 tctaatactgtcaggtaaagatgtc 75
|||||||||||||||||| ||||||
Sbjct: 39 tctaatactgtcaggtaatgatgtc 63
>39065_sme-mir-8a:mirbase
Length = 70
Score = 38.2 bits (19), Expect = 0.001
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 51 tctaatactgtcaggtaaagatg 73
|||||||||||||||||| ||||
Sbjct: 43 tctaatactgtcaggtaacgatg 65
