miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>35353_ame-mir-13b:mirbase
Length = 79
Score = 91.7 bits (46), Expect = 8e-20
Identities = 72/79 (91%), Gaps = 5/79 (6%)
Strand = Plus / Plus
Query: 6 gcgatccgatcgtcaaattggttgtggcgtgttg----tctagattttcatatcacagcc 61
||||||| |||||||||||||||||||||||||| |||||| |||||||||||||||
Sbjct: 1 gcgatccaatcgtcaaattggttgtggcgtgttgcttttctaga-tttcatatcacagcc 59
Query: 62 atttttgacgagttggatc 80
||||||||||| |||||||
Sbjct: 60 atttttgacgatttggatc 78
>35527_bmo-mir-13b:mirbase
Length = 80
Score = 58.0 bits (29), Expect = 1e-09
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 49 tcatatcacagccatttttgacgagttgg 77
|||||||||||||||||||||||||||||
Sbjct: 45 tcatatcacagccatttttgacgagttgg 73
>35180_aae-mir-13:mirbase
Length = 84
Score = 42.1 bits (21), Expect = 7e-05
Identities = 31/33 (93%), Gaps = 1/33 (3%)
Strand = Plus / Plus
Query: 48 ttcatatcacagccatttttgacgagttggatc 80
||||||||||||||| |||||||||||| ||||
Sbjct: 50 ttcatatcacagcca-ttttgacgagttcgatc 81
>36772_dmo-mir-13b-2:mirbase
Length = 67
Score = 42.1 bits (21), Expect = 7e-05
Identities = 31/33 (93%), Gaps = 1/33 (3%)
Strand = Plus / Plus
Query: 43 agattttcatatcacagccatttttgacgagtt 75
||||| |||||||||||||| ||||||||||||
Sbjct: 35 agattatcatatcacagcca-ttttgacgagtt 66
>35281_aga-mir-13b:mirbase
Length = 94
Score = 40.1 bits (20), Expect = 3e-04
Identities = 27/28 (96%), Gaps = 1/28 (3%)
Strand = Plus / Plus
Query: 48 ttcatatcacagccatttttgacgagtt 75
||||||||||||||| ||||||||||||
Sbjct: 52 ttcatatcacagcca-ttttgacgagtt 78
>36011_cqu-mir-13:mirbase
Length = 82
Score = 40.1 bits (20), Expect = 3e-04
Identities = 27/28 (96%), Gaps = 1/28 (3%)
Strand = Plus / Plus
Query: 48 ttcatatcacagccatttttgacgagtt 75
||||||||||||||| ||||||||||||
Sbjct: 51 ttcatatcacagcca-ttttgacgagtt 77
>36174_der-mir-13b-2:mirbase
Length = 68
Score = 40.1 bits (20), Expect = 3e-04
Identities = 27/28 (96%), Gaps = 1/28 (3%)
Strand = Plus / Plus
Query: 48 ttcatatcacagccatttttgacgagtt 75
||||||||||||||| ||||||||||||
Sbjct: 40 ttcatatcacagcca-ttttgacgagtt 66
>36262_dgr-mir-13b-2:mirbase
Length = 73
Score = 40.1 bits (20), Expect = 3e-04
Identities = 27/28 (96%), Gaps = 1/28 (3%)
Strand = Plus / Plus
Query: 48 ttcatatcacagccatttttgacgagtt 75
||||||||||||||| ||||||||||||
Sbjct: 45 ttcatatcacagcca-ttttgacgagtt 71
>36363_dme-mir-13b-2:mirbase
Length = 70
Score = 40.1 bits (20), Expect = 3e-04
Identities = 27/28 (96%), Gaps = 1/28 (3%)
Strand = Plus / Plus
Query: 48 ttcatatcacagccatttttgacgagtt 75
||||||||||||||| ||||||||||||
Sbjct: 42 ttcatatcacagcca-ttttgacgagtt 68
>36364_dme-mir-13b-2:mirbase
Length = 70
Score = 40.1 bits (20), Expect = 3e-04
Identities = 27/28 (96%), Gaps = 1/28 (3%)
Strand = Plus / Plus
Query: 48 ttcatatcacagccatttttgacgagtt 75
||||||||||||||| ||||||||||||
Sbjct: 42 ttcatatcacagcca-ttttgacgagtt 68
>37134_dse-mir-13b-2:mirbase
Length = 68
Score = 40.1 bits (20), Expect = 3e-04
Identities = 27/28 (96%), Gaps = 1/28 (3%)
Strand = Plus / Plus
Query: 48 ttcatatcacagccatttttgacgagtt 75
||||||||||||||| ||||||||||||
Sbjct: 40 ttcatatcacagcca-ttttgacgagtt 66
>37210_dsi-mir-13b-2:mirbase
Length = 68
Score = 40.1 bits (20), Expect = 3e-04
Identities = 27/28 (96%), Gaps = 1/28 (3%)
Strand = Plus / Plus
Query: 48 ttcatatcacagccatttttgacgagtt 75
||||||||||||||| ||||||||||||
Sbjct: 40 ttcatatcacagcca-ttttgacgagtt 66
>37348_dvi-mir-13b-2:mirbase
Length = 73
Score = 40.1 bits (20), Expect = 3e-04
Identities = 27/28 (96%), Gaps = 1/28 (3%)
Strand = Plus / Plus
Query: 48 ttcatatcacagccatttttgacgagtt 75
||||||||||||||| ||||||||||||
Sbjct: 45 ttcatatcacagcca-ttttgacgagtt 71
>37424_dwi-mir-13b-1:mirbase
Length = 71
Score = 40.1 bits (20), Expect = 3e-04
Identities = 27/28 (96%), Gaps = 1/28 (3%)
Strand = Plus / Plus
Query: 48 ttcatatcacagccatttttgacgagtt 75
||||||||||||||| ||||||||||||
Sbjct: 42 ttcatatcacagcca-ttttgacgagtt 68
>37425_dwi-mir-13b-2:mirbase
Length = 67
Score = 40.1 bits (20), Expect = 3e-04
Identities = 27/28 (96%), Gaps = 1/28 (3%)
Strand = Plus / Plus
Query: 48 ttcatatcacagccatttttgacgagtt 75
||||||||||||||| ||||||||||||
Sbjct: 40 ttcatatcacagcca-ttttgacgagtt 66
>37502_dya-mir-13b-2:mirbase
Length = 68
Score = 40.1 bits (20), Expect = 3e-04
Identities = 27/28 (96%), Gaps = 1/28 (3%)
Strand = Plus / Plus
Query: 48 ttcatatcacagccatttttgacgagtt 75
||||||||||||||| ||||||||||||
Sbjct: 40 ttcatatcacagcca-ttttgacgagtt 66
