miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00073;mir-156;AB108111.1/202-100 15957:Phleum pratense (timothy
grass)
Length = 103
Score = 119 bits (60), Expect = 1e-26
Identities = 93/103 (90%), Gaps = 2/103 (1%)
Strand = Plus / Plus
Query: 34 ctgacagaagagagtgagcacacatggtgcctttcttgcatgatgtatgatcg--agaga 91
|||||||||||||||||||||||||||||| ||||||||||| || || | | |||||
Sbjct: 1 ctgacagaagagagtgagcacacatggtgcttttcttgcatggtgaattaatgggagaga 60
Query: 92 gttcatgctcgaagctatgcgtgctcacttctctctctgtcag 134
||||||||| ||||||||| |||||||||||||||||||||||
Sbjct: 61 gttcatgcttgaagctatgtgtgctcacttctctctctgtcag 103
>RF00073;mir-156;EU004241.2/110-202 4529:Oryza rufipogon
Length = 93
Score = 87.7 bits (44), Expect = 4e-17
Identities = 86/101 (85%), Gaps = 8/101 (7%)
Strand = Plus / Plus
Query: 34 ctgacagaagagagtgagcacacatggtgcctttcttgcatgatgtatgatcgagagagt 93
||||||||||||||||||||||||||||| |||||||||||| || ||| |
Sbjct: 1 ctgacagaagagagtgagcacacatggtgactttcttgcatgctgaatggac-------- 52
Query: 94 tcatgctcgaagctatgcgtgctcacttctctctctgtcag 134
||||||| ||||||||| |||||||||||||||||||||||
Sbjct: 53 tcatgcttgaagctatgtgtgctcacttctctctctgtcag 93
>RF00073;mir-156;EU548405.1/118-209 3702:Arabidopsis thaliana
(thale cress)
Length = 92
Score = 71.9 bits (36), Expect = 3e-12
Identities = 39/40 (97%)
Strand = Plus / Plus
Query: 35 tgacagaagagagtgagcacacatggtgcctttcttgcat 74
|||||||||||||||||||||||||||| |||||||||||
Sbjct: 2 tgacagaagagagtgagcacacatggtggctttcttgcat 41
>RF00073;mir-156;AP010362.1/32796-32877 34305:Lotus japonicus
Length = 82
Score = 61.9 bits (31), Expect = 3e-09
Identities = 38/39 (97%), Gaps = 1/39 (2%)
Strand = Plus / Plus
Query: 35 tgacagaagagagtgagcacacatggtgcctttcttgca 73
|||||||||||||||||||||||||||| ||||||||||
Sbjct: 2 tgacagaagagagtgagcacacatggtg-ctttcttgca 39
>RF00073;mir-156;AP009602.1/6441-6354 4081:Solanum lycopersicum
Length = 88
Score = 61.9 bits (31), Expect = 3e-09
Identities = 37/39 (94%)
Strand = Plus / Plus
Query: 95 catgctcgaagctatgcgtgctcacttctctctctgtca 133
|||||| |||||||||||||||||||||||| |||||||
Sbjct: 49 catgcttgaagctatgcgtgctcacttctctatctgtca 87
Score = 46.1 bits (23), Expect = 2e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 35 tgacagaagagagtgagcacacatggt 61
||||||||||||||||||||| |||||
Sbjct: 2 tgacagaagagagtgagcacatatggt 28
>RF00073;mir-156;EU548379.1/158-255 3702:Arabidopsis thaliana
(thale cress)
Length = 98
Score = 58.0 bits (29), Expect = 4e-08
Identities = 39/41 (95%), Gaps = 1/41 (2%)
Strand = Plus / Plus
Query: 35 tgacagaagagagtgagcacacatggtgcctttcttgcatg 75
|||||||||||||||||||||||||||| |||||||||||
Sbjct: 2 tgacagaagagagtgagcacacatggtg-gtttcttgcatg 41
>RF00073;mir-156;AP009515.1/86721-86633 4081:Solanum lycopersicum
Length = 89
Score = 58.0 bits (29), Expect = 4e-08
Identities = 42/45 (93%), Gaps = 1/45 (2%)
Strand = Plus / Plus
Query: 35 tgacagaagagagtgagcacacatggtgcctttcttgcatgatgt 79
|||||||||||||||||||||||||||| ||||| |||||||||
Sbjct: 2 tgacagaagagagtgagcacacatggtg-ttttctagcatgatgt 45
>RF00073;mir-156;AP009602.1/17046-16952 4081:Solanum lycopersicum
Length = 95
Score = 58.0 bits (29), Expect = 4e-08
Identities = 39/41 (95%), Gaps = 1/41 (2%)
Strand = Plus / Plus
Query: 39 agaagagagtgagcacacatggtgcctttcttgcatgatgt 79
|||||||||||||||||||||||| |||||||||||||||
Sbjct: 6 agaagagagtgagcacacatggtg-ttttcttgcatgatgt 45
>RF00073;mir-156;AASG02007740.1/7202-7285 3988:Ricinus communis
(castor bean)
Length = 84
Score = 54.0 bits (27), Expect = 6e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 35 tgacagaagagagtgagcacacatggt 61
|||||||||||||||||||||||||||
Sbjct: 2 tgacagaagagagtgagcacacatggt 28
>RF00073;mir-156;AASG02002418.1/21340-21254 3988:Ricinus communis
(castor bean)
Length = 87
Score = 54.0 bits (27), Expect = 6e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 35 tgacagaagagagtgagcacacatggt 61
|||||||||||||||||||||||||||
Sbjct: 2 tgacagaagagagtgagcacacatggt 28
>RF00073;mir-156;AC152551.33/14978-14893 3880:Medicago truncatula
(barrel medic)
Length = 86
Score = 54.0 bits (27), Expect = 6e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 35 tgacagaagagagtgagcacacatggt 61
|||||||||||||||||||||||||||
Sbjct: 2 tgacagaagagagtgagcacacatggt 28
>RF00073;mir-156;AM455203.2/879-962 29760:Vitis vinifera
Length = 84
Score = 54.0 bits (27), Expect = 6e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 35 tgacagaagagagtgagcacacatggt 61
|||||||||||||||||||||||||||
Sbjct: 2 tgacagaagagagtgagcacacatggt 28
>RF00073;mir-156;AARH01003139.1/114039-113955 3694:Populus
trichocarpa
Length = 85
Score = 52.0 bits (26), Expect = 2e-06
Identities = 39/42 (92%), Gaps = 1/42 (2%)
Strand = Plus / Plus
Query: 35 tgacagaagagagtgagcacacatggtgcctttcttgcatga 76
||||||||||||||||||||||| ||| |||||||||||||
Sbjct: 2 tgacagaagagagtgagcacacagggt-actttcttgcatga 42
>RF00073;mir-156;AM467075.2/5013-4925 29760:Vitis vinifera
Length = 89
Score = 52.0 bits (26), Expect = 2e-06
Identities = 38/42 (90%)
Strand = Plus / Plus
Query: 35 tgacagaagagagtgagcacacatggtgcctttcttgcatga 76
||||||| |||||||||||| |||||| | ||||||||||||
Sbjct: 2 tgacagaggagagtgagcactcatggttcttttcttgcatga 43
>RF00073;mir-156;ABXC01004937.1/5197-5315 4558:Sorghum bicolor
(sorghum)
Length = 119
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 109 tgcgtgctcacttctctctctgtcag 134
||||||||||||||||||||||||||
Sbjct: 94 tgcgtgctcacttctctctctgtcag 119
Score = 48.1 bits (24), Expect = 4e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 34 ctgacagaagagagtgagcacaca 57
||||||||||||||||||||||||
Sbjct: 1 ctgacagaagagagtgagcacaca 24
>RF00073;mir-156;AP005429.3/80050-80161 39947:Oryza sativa Japonica
Group
Length = 112
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 109 tgcgtgctcacttctctctctgtcag 134
||||||||||||||||||||||||||
Sbjct: 87 tgcgtgctcacttctctctctgtcag 112
Score = 48.1 bits (24), Expect = 4e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 34 ctgacagaagagagtgagcacaca 57
||||||||||||||||||||||||
Sbjct: 1 ctgacagaagagagtgagcacaca 24
>RF00073;mir-156;AP003332.4/36088-35998 39947:Oryza sativa Japonica
Group
Length = 91
Score = 52.0 bits (26), Expect = 2e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 104 agctatgcgtgctcacttctctctctgtca 133
||||| ||||||||||||||||||||||||
Sbjct: 61 agctacgcgtgctcacttctctctctgtca 90
Score = 46.1 bits (23), Expect = 2e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 35 tgacagaagagagtgagcacacatggt 61
|||||||||||||||||||||| ||||
Sbjct: 2 tgacagaagagagtgagcacacgtggt 28
>RF00073;mir-156;AAAA02027469.1/16633-16520 39946:Oryza sativa
Indica Group
Length = 114
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 109 tgcgtgctcacttctctctctgtcag 134
||||||||||||||||||||||||||
Sbjct: 89 tgcgtgctcacttctctctctgtcag 114
Score = 48.1 bits (24), Expect = 4e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 34 ctgacagaagagagtgagcacaca 57
||||||||||||||||||||||||
Sbjct: 1 ctgacagaagagagtgagcacaca 24
>RF00073;mir-156;EU004275.2/501-588 39946:Oryza sativa Indica
Group
Length = 88
Score = 52.0 bits (26), Expect = 2e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 34 ctgacagaagagagtgagcacacatggtgc 63
|||||||||||||||||||||||| |||||
Sbjct: 1 ctgacagaagagagtgagcacacacggtgc 30
>RF00073;mir-156;ABIM01007853.1/18159-18072 3649:Carica papaya
(papaya)
Length = 88
Score = 50.1 bits (25), Expect = 1e-05
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 35 tgacagaagagagtgagcacacatggtgcctttcttgcatg 75
|||||||||||||||||||| ||||| | |||||||||||
Sbjct: 2 tgacagaagagagtgagcacccatggcgtttttcttgcatg 42
Score = 46.1 bits (23), Expect = 2e-04
Identities = 36/39 (92%), Gaps = 1/39 (2%)
Strand = Plus / Plus
Query: 95 catgctcgaagctatgcgtgctcacttctctctctgtca 133
||||||||||||| ||||||||| | |||||||||||||
Sbjct: 50 catgctcgaagctctgcgtgctctc-tctctctctgtca 87
>RF00073;mir-156;AC005917.3/7348-7264 3702:Arabidopsis thaliana
(thale cress)
Length = 85
Score = 50.1 bits (25), Expect = 1e-05
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 36 gacagaagagagtgagcacacatgg 60
|||||||||||||||||||||||||
Sbjct: 3 gacagaagagagtgagcacacatgg 27
>RF00073;mir-156;EU548281.1/284-201 3702:Arabidopsis thaliana
(thale cress)
Length = 84
Score = 48.1 bits (24), Expect = 4e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 34 ctgacagaagagagtgagcacaca 57
||||||||||||||||||||||||
Sbjct: 1 ctgacagaagagagtgagcacaca 24
>RF00073;mir-156;AARH01007531.1/19950-19866 3694:Populus
trichocarpa
Length = 85
Score = 48.1 bits (24), Expect = 4e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 34 ctgacagaagagagtgagcacaca 57
||||||||||||||||||||||||
Sbjct: 1 ctgacagaagagagtgagcacaca 24
>RF00073;mir-156;AARH01003087.1/284432-284516 3694:Populus
trichocarpa
Length = 85
Score = 48.1 bits (24), Expect = 4e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 34 ctgacagaagagagtgagcacaca 57
||||||||||||||||||||||||
Sbjct: 1 ctgacagaagagagtgagcacaca 24
>RF00073;mir-156;AM456699.2/13257-13176 29760:Vitis vinifera
Length = 82
Score = 48.1 bits (24), Expect = 4e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 34 ctgacagaagagagtgagcacaca 57
||||||||||||||||||||||||
Sbjct: 1 ctgacagaagagagtgagcacaca 24
>RF00073;mir-156;ABXC01001718.1/172900-172815 4558:Sorghum bicolor
(sorghum)
Length = 86
Score = 48.1 bits (24), Expect = 4e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 35 tgacagaagagagtgagcacacatggtg 62
||||||||||||||||||||||| ||||
Sbjct: 2 tgacagaagagagtgagcacacacggtg 29
>RF00073;mir-156;AY551212.1/74-153 4530:Oryza sativa (rice)
Length = 80
Score = 48.1 bits (24), Expect = 4e-05
Identities = 45/51 (88%), Gaps = 2/51 (3%)
Strand = Plus / Plus
Query: 86 gagagagttcatg--ctcgaagctatgcgtgctcacttctctctctgtcag 134
||||||||||||| || |||||||| |||||||||||||| ||||||||
Sbjct: 30 gagagagttcatgtgcttgaagctatatgtgctcacttctctttctgtcag 80
>RF00073;mir-156;ABIM01011291.1/8261-8180 3649:Carica papaya
(papaya)
Length = 82
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 34 ctgacagaagagagtgagcacac 56
|||||||||||||||||||||||
Sbjct: 1 ctgacagaagagagtgagcacac 23
Score = 44.1 bits (22), Expect = 6e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 109 tgcgtgctcacttctctctctgtcag 134
||||||||||||||||| ||||||||
Sbjct: 57 tgcgtgctcacttctctttctgtcag 82
>RF00073;mir-156;ABIM01019325.1/182-263 3649:Carica papaya
(papaya)
Length = 82
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 35 tgacagaagagagtgagcacaca 57
|||||||||||||||||||||||
Sbjct: 2 tgacagaagagagtgagcacaca 24
>RF00073;mir-156;AL391222.1/7873-7786 3702:Arabidopsis thaliana
(thale cress)
Length = 88
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 35 tgacagaagagagtgagcacaca 57
|||||||||||||||||||||||
Sbjct: 2 tgacagaagagagtgagcacaca 24
>RF00073;mir-156;AASG02015394.1/3647-3565 3988:Ricinus communis
(castor bean)
Length = 83
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 34 ctgacagaagagagtgagcacac 56
|||||||||||||||||||||||
Sbjct: 1 ctgacagaagagagtgagcacac 23
>RF00073;mir-156;AASG02001561.1/34616-34535 3988:Ricinus communis
(castor bean)
Length = 82
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 35 tgacagaagagagtgagcacaca 57
|||||||||||||||||||||||
Sbjct: 2 tgacagaagagagtgagcacaca 24
>RF00073;mir-156;EU548312.1/193-274 3702:Arabidopsis thaliana
(thale cress)
Length = 82
Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 34 ctgacagaagagagtgagcaca 55
||||||||||||||||||||||
Sbjct: 1 ctgacagaagagagtgagcaca 22
>RF00073;mir-156;AP010300.1/44116-44196 34305:Lotus japonicus
Length = 81
Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 35 tgacagaagagagtgagcacac 56
||||||||||||||||||||||
Sbjct: 2 tgacagaagagagtgagcacac 23
>RF00073;mir-156;AM449200.1/5253-5335 29760:Vitis vinifera
Length = 83
Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 34 ctgacagaagagagtgagcaca 55
||||||||||||||||||||||
Sbjct: 1 ctgacagaagagagtgagcaca 22
>RF00073;mir-156;EU957877.1/286-402 4577:Zea mays
Length = 117
Score = 44.1 bits (22), Expect = 6e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 109 tgcgtgctcacttctctctctgtcag 134
||||||||||||||||| ||||||||
Sbjct: 92 tgcgtgctcacttctctttctgtcag 117
>RF00073;mir-156;ABXC01004344.1/59682-59592 4558:Sorghum bicolor
(sorghum)
Length = 91
Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 35 tgacagaagagagtgagcacac 56
||||||||||||||||||||||
Sbjct: 2 tgacagaagagagtgagcacac 23
>RF00073;mir-156;ABXC01002848.1/26684-26598 4558:Sorghum bicolor
(sorghum)
Length = 87
Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 35 tgacagaagagagtgagcacac 56
||||||||||||||||||||||
Sbjct: 2 tgacagaagagagtgagcacac 23
>RF00073;mir-156;ABXC01001399.1/20364-20487 4558:Sorghum bicolor
(sorghum)
Length = 124
Score = 44.1 bits (22), Expect = 6e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 109 tgcgtgctcacttctctctctgtcag 134
||||||||||||||||| ||||||||
Sbjct: 99 tgcgtgctcacttctctttctgtcag 124
>RF00073;mir-156;ABXC01002449.1/27576-27491 4558:Sorghum bicolor
(sorghum)
Length = 86
Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 35 tgacagaagagagtgagcacac 56
||||||||||||||||||||||
Sbjct: 2 tgacagaagagagtgagcacac 23
>RF00073;mir-156;AACV01011046.1/23142-23062 39947:Oryza sativa
Japonica Group
Length = 81
Score = 44.1 bits (22), Expect = 6e-04
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 97 tgctcgaagctatgcgtgctcacttctctctctgtcag 134
|||| |||||||| |||||||||||||| ||||||||
Sbjct: 44 tgcttgaagctatatgtgctcacttctctttctgtcag 81
>RF00073;mir-156;AAAA02006911.1/103-14 39946:Oryza sativa Indica
Group
Length = 90
Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 35 tgacagaagagagtgagcacac 56
||||||||||||||||||||||
Sbjct: 2 tgacagaagagagtgagcacac 23
>RF00073;mir-156;AK073452.1/342-427 39947:Oryza sativa Japonica
Group
Length = 86
Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 35 tgacagaagagagtgagcacac 56
||||||||||||||||||||||
Sbjct: 2 tgacagaagagagtgagcacac 23
>RF00073;mir-156;AP005286.3/98217-98130 39947:Oryza sativa
Japonica Group
Length = 88
Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 35 tgacagaagagagtgagcacac 56
||||||||||||||||||||||
Sbjct: 2 tgacagaagagagtgagcacac 23
>RF00073;mir-156;CU406049.1/183-270 4529:Oryza rufipogon
Length = 88
Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 35 tgacagaagagagtgagcacac 56
||||||||||||||||||||||
Sbjct: 2 tgacagaagagagtgagcacac 23
