miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00073;mir-156;ABXC01006854.1/140253-140338 4558:Sorghum bicolor
(sorghum)
Length = 86
Score = 147 bits (74), Expect = 5e-35
Identities = 83/86 (96%)
Strand = Plus / Plus
Query: 31 ttgacagaagagagcgagcacctggcgcggcgaccggcatggaacgcatgccgtccccgc 90
|||||||||||||||||||||| ||||||||| |||||||||| ||||||||||||||||
Sbjct: 1 ttgacagaagagagcgagcacccggcgcggcggccggcatggagcgcatgccgtccccgc 60
Query: 91 cgcgtgctcgcttctctttctgtcag 116
||||||||||||||||||||||||||
Sbjct: 61 cgcgtgctcgcttctctttctgtcag 86
>RF00073;mir-156;ABXC01002449.1/27576-27491 4558:Sorghum bicolor
(sorghum)
Length = 86
Score = 67.9 bits (34), Expect = 4e-11
Identities = 73/86 (84%)
Strand = Plus / Plus
Query: 31 ttgacagaagagagcgagcacctggcgcggcgaccggcatggaacgcatgccgtccccgc 90
|||||||||||||| |||||| |||||| ||| |||||| | | ||| ||||| |||
Sbjct: 1 ttgacagaagagagtgagcacacggcgcgacgaacggcataatatgtatgtcgtcctcgc 60
Query: 91 cgcgtgctcgcttctctttctgtcag 116
||||||||| ||||||||||||||||
Sbjct: 61 cgcgtgctcacttctctttctgtcag 86
>RF00073;mir-156;CU406049.1/183-270 4529:Oryza rufipogon
Length = 88
Score = 56.0 bits (28), Expect = 1e-07
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 85 ccccgccgcgtgctcgcttctctttctgtcag 116
|||||||||||||||||| |||||||||||||
Sbjct: 57 ccccgccgcgtgctcgctcctctttctgtcag 88
>RF00073;mir-156;AK073452.1/342-427 39947:Oryza sativa Japonica
Group
Length = 86
Score = 46.1 bits (23), Expect = 1e-04
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 81 ccgtccccgccgcgtgctcgcttctctttctgtca 115
|||||| |||||||||||| || ||||||||||||
Sbjct: 51 ccgtcctcgccgcgtgctcactcctctttctgtca 85
