miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00073;mir-156;ABXC01006854.1/140253-140338 4558:Sorghum bicolor
           (sorghum)
          Length = 86

 Score =  147 bits (74), Expect = 5e-35
 Identities = 83/86 (96%)
 Strand = Plus / Plus

                                                                       
Query: 31  ttgacagaagagagcgagcacctggcgcggcgaccggcatggaacgcatgccgtccccgc 90
           |||||||||||||||||||||| ||||||||| |||||||||| ||||||||||||||||
Sbjct: 1   ttgacagaagagagcgagcacccggcgcggcggccggcatggagcgcatgccgtccccgc 60

                                     
Query: 91  cgcgtgctcgcttctctttctgtcag 116
           ||||||||||||||||||||||||||
Sbjct: 61  cgcgtgctcgcttctctttctgtcag 86




>RF00073;mir-156;ABXC01002449.1/27576-27491 4558:Sorghum bicolor
           (sorghum)
          Length = 86

 Score = 67.9 bits (34), Expect = 4e-11
 Identities = 73/86 (84%)
 Strand = Plus / Plus

                                                                       
Query: 31  ttgacagaagagagcgagcacctggcgcggcgaccggcatggaacgcatgccgtccccgc 90
           |||||||||||||| ||||||  |||||| ||| ||||||   | | ||| ||||| |||
Sbjct: 1   ttgacagaagagagtgagcacacggcgcgacgaacggcataatatgtatgtcgtcctcgc 60

                                     
Query: 91  cgcgtgctcgcttctctttctgtcag 116
           ||||||||| ||||||||||||||||
Sbjct: 61  cgcgtgctcacttctctttctgtcag 86




>RF00073;mir-156;CU406049.1/183-270 4529:Oryza rufipogon
          Length = 88

 Score = 56.0 bits (28), Expect = 1e-07
 Identities = 31/32 (96%)
 Strand = Plus / Plus

                                           
Query: 85  ccccgccgcgtgctcgcttctctttctgtcag 116
           |||||||||||||||||| |||||||||||||
Sbjct: 57  ccccgccgcgtgctcgctcctctttctgtcag 88




>RF00073;mir-156;AK073452.1/342-427 39947:Oryza sativa Japonica
           Group
          Length = 86

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 32/35 (91%)
 Strand = Plus / Plus

                                              
Query: 81  ccgtccccgccgcgtgctcgcttctctttctgtca 115
           |||||| |||||||||||| || ||||||||||||
Sbjct: 51  ccgtcctcgccgcgtgctcactcctctttctgtca 85