miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00027;let-7;AAJJ01000960.1/12168-12093 7070:Tribolium castaneum
(red flour beetle)
Length = 76
Score = 151 bits (76), Expect = 1e-36
Identities = 76/76 (100%)
Strand = Plus / Plus
Query: 2 tctgtttgaggtagtaggttgtatagtaagtattacacctattgggagtgctgtacagcc 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tctgtttgaggtagtaggttgtatagtaagtattacacctattgggagtgctgtacagcc 60
Query: 62 tgctaactttcccaga 77
||||||||||||||||
Sbjct: 61 tgctaactttcccaga 76
>RF00027;let-7;ABIR01000029.1/50721-50818 6334:Trichinella
spiralis
Length = 98
Score = 46.1 bits (23), Expect = 6e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 2 tctgtttgaggtagtaggttgtatagt 28
||||| |||||||||||||||||||||
Sbjct: 1 tctgtctgaggtagtaggttgtatagt 27
>RF00027;let-7;BABH01009736.1/23777-23700 7091:Bombyx mori
(domestic silkworm)
Length = 78
Score = 46.1 bits (23), Expect = 6e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 7 ttgaggtagtaggttgtatagta 29
|||||||||||||||||||||||
Sbjct: 6 ttgaggtagtaggttgtatagta 28
>RF00027;let-7;AAQB01006449.1/358437-358507 7260:Drosophila
willistoni
Length = 71
Score = 46.1 bits (23), Expect = 6e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 7 ttgaggtagtaggttgtatagta 29
|||||||||||||||||||||||
Sbjct: 6 ttgaggtagtaggttgtatagta 28
>RF00027;let-7;AAIZ01016032.1/2164-2232 7234:Drosophila persimilis
Length = 69
Score = 46.1 bits (23), Expect = 6e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 7 ttgaggtagtaggttgtatagta 29
|||||||||||||||||||||||
Sbjct: 6 ttgaggtagtaggttgtatagta 28
>RF00027;let-7;AAPP01015675.1/360249-360318 7217:Drosophila
ananassae
Length = 70
Score = 46.1 bits (23), Expect = 6e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 7 ttgaggtagtaggttgtatagta 29
|||||||||||||||||||||||
Sbjct: 6 ttgaggtagtaggttgtatagta 28
>RF00027;let-7;AAPT01004257.1/151-220 7222:Drosophila grimshawi
Length = 70
Score = 46.1 bits (23), Expect = 6e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 7 ttgaggtagtaggttgtatagta 29
|||||||||||||||||||||||
Sbjct: 6 ttgaggtagtaggttgtatagta 28
>RF00027;let-7;AANI01016295.1/2335-2404 7244:Drosophila virilis
Length = 70
Score = 46.1 bits (23), Expect = 6e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 7 ttgaggtagtaggttgtatagta 29
|||||||||||||||||||||||
Sbjct: 6 ttgaggtagtaggttgtatagta 28
>RF00027;let-7;AAPU01010514.1/89793-89724 7230:Drosophila
mojavensis
Length = 70
Score = 46.1 bits (23), Expect = 6e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 7 ttgaggtagtaggttgtatagta 29
|||||||||||||||||||||||
Sbjct: 6 ttgaggtagtaggttgtatagta 28
>RF00027;let-7;ABEG01002465.1/18268-18339 135651:Caenorhabditis
brenneri
Length = 72
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 7 ttgaggtagtaggttgtatagt 28
||||||||||||||||||||||
Sbjct: 5 ttgaggtagtaggttgtatagt 26
>RF00027;let-7;AAGU02067998.1/2847-2772 9785:Loxodonta africana
(African savanna elephant)
Length = 76
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 7 ttgaggtagtaggttgtatagt 28
||||||||||||||||||||||
Sbjct: 6 ttgaggtagtaggttgtatagt 27
>RF00027;let-7;CAAB01004143.1/18701-18777 31033:Takifugu rubripes
Length = 77
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 7 ttgaggtagtaggttgtatagt 28
||||||||||||||||||||||
Sbjct: 6 ttgaggtagtaggttgtatagt 27
>RF00027;let-7;AANH01000597.1/43752-43676 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 77
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 7 ttgaggtagtaggttgtatagt 28
||||||||||||||||||||||
Sbjct: 6 ttgaggtagtaggttgtatagt 27
>RF00027;let-7;BAAE01285721.1/657-581 8090:Oryzias latipes
(Japanese medaka)
Length = 77
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 7 ttgaggtagtaggttgtatagt 28
||||||||||||||||||||||
Sbjct: 6 ttgaggtagtaggttgtatagt 27
>RF00027;let-7;AADG05003176.1/75207-75290 7460:Apis mellifera
(honey bee)
Length = 84
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 8 tgaggtagtaggttgtatagta 29
||||||||||||||||||||||
Sbjct: 7 tgaggtagtaggttgtatagta 28
>RF00027;let-7;ABLA01021413.1/563-640 51029:Heterodera glycines
Length = 78
Score = 42.1 bits (21), Expect = 0.001
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 8 tgaggtagtaggttgtatagt 28
|||||||||||||||||||||
Sbjct: 7 tgaggtagtaggttgtatagt 27
>RF00027;let-7;AAQA01000457.1/25368-25290 6279:Brugia malayi
Length = 79
Score = 42.1 bits (21), Expect = 0.001
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 8 tgaggtagtaggttgtatagt 28
|||||||||||||||||||||
Sbjct: 7 tgaggtagtaggttgtatagt 27
>RF00027;let-7;Z70203.2/12451-12379 6239:Caenorhabditis elegans
Length = 73
Score = 42.1 bits (21), Expect = 0.001
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 8 tgaggtagtaggttgtatagt 28
|||||||||||||||||||||
Sbjct: 6 tgaggtagtaggttgtatagt 26
>RF00027;let-7;AAGD02006482.1/22892-22821 31234:Caenorhabditis
remanei
Length = 72
Score = 42.1 bits (21), Expect = 0.001
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 8 tgaggtagtaggttgtatagt 28
|||||||||||||||||||||
Sbjct: 6 tgaggtagtaggttgtatagt 26
>RF00027;let-7;AC084471.1/10992-10920 6238:Caenorhabditis briggsae
Length = 73
Score = 42.1 bits (21), Expect = 0.001
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 8 tgaggtagtaggttgtatagt 28
|||||||||||||||||||||
Sbjct: 6 tgaggtagtaggttgtatagt 26
>RF00027;let-7;ABKE01000556.1/121-205 54126:Pristionchus pacificus
Length = 85
Score = 42.1 bits (21), Expect = 0.001
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 8 tgaggtagtaggttgtatagt 28
|||||||||||||||||||||
Sbjct: 6 tgaggtagtaggttgtatagt 26
>RF00027;let-7;AAFR03057393.1/5692-5610 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 83
Score = 42.1 bits (21), Expect = 0.001
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 8 tgaggtagtaggttgtatagt 28
|||||||||||||||||||||
Sbjct: 7 tgaggtagtaggttgtatagt 27
>RF00027;let-7;AANN01118339.1/762-680 9365:Erinaceus europaeus
(western European hedgehog)
Length = 83
Score = 42.1 bits (21), Expect = 0.001
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 8 tgaggtagtaggttgtatagt 28
|||||||||||||||||||||
Sbjct: 7 tgaggtagtaggttgtatagt 27
>RF00027;let-7;AAKN02054982.1/20495-20418 10141:Cavia porcellus
(domestic guinea pig)
Length = 78
Score = 42.1 bits (21), Expect = 0.001
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 8 tgaggtagtaggttgtatagt 28
|||||||||||||||||||||
Sbjct: 7 tgaggtagtaggttgtatagt 27
>RF00027;let-7;ABRQ01826413.1/555-477 9813:Procavia capensis (cape
rock hyrax)
Length = 79
Score = 42.1 bits (21), Expect = 0.001
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 8 tgaggtagtaggttgtatagt 28
|||||||||||||||||||||
Sbjct: 7 tgaggtagtaggttgtatagt 27
>RF00027;let-7;ABQF01051678.1/9631-9544 59729:Taeniopygia guttata
Length = 88
Score = 42.1 bits (21), Expect = 0.001
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 8 tgaggtagtaggttgtatagt 28
|||||||||||||||||||||
Sbjct: 7 tgaggtagtaggttgtatagt 27
>RF00027;let-7;AADN02044881.1/4561-4474 9031:Gallus gallus
(chicken)
Length = 88
Score = 42.1 bits (21), Expect = 0.001
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 8 tgaggtagtaggttgtatagt 28
|||||||||||||||||||||
Sbjct: 7 tgaggtagtaggttgtatagt 27
>RF00027;let-7;CR847944.11/44965-45050 7955:Danio rerio
(zebrafish)
Length = 86
Score = 42.1 bits (21), Expect = 0.001
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 8 tgaggtagtaggttgtatagt 28
|||||||||||||||||||||
Sbjct: 7 tgaggtagtaggttgtatagt 27
>RF00027;let-7;BX897734.11/94677-94763 7955:Danio rerio
(zebrafish)
Length = 87
Score = 42.1 bits (21), Expect = 0.001
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 8 tgaggtagtaggttgtatagt 28
|||||||||||||||||||||
Sbjct: 7 tgaggtagtaggttgtatagt 27
>RF00027;let-7;BX284646.4/46451-46375 7955:Danio rerio (zebrafish)
Length = 77
Score = 42.1 bits (21), Expect = 0.001
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 8 tgaggtagtaggttgtatagt 28
|||||||||||||||||||||
Sbjct: 7 tgaggtagtaggttgtatagt 27
>RF00027;let-7;BX663520.9/232739-232815 7955:Danio rerio
(zebrafish)
Length = 77
Score = 42.1 bits (21), Expect = 0.001
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 8 tgaggtagtaggttgtatagt 28
|||||||||||||||||||||
Sbjct: 7 tgaggtagtaggttgtatagt 27
>RF00027;let-7;CAAB01006742.1/7972-8057 31033:Takifugu rubripes
Length = 86
Score = 42.1 bits (21), Expect = 0.001
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 8 tgaggtagtaggttgtatagt 28
|||||||||||||||||||||
Sbjct: 7 tgaggtagtaggttgtatagt 27
>RF00027;let-7;CAAB01000128.1/27883-27800 31033:Takifugu rubripes
Length = 84
Score = 42.1 bits (21), Expect = 0.001
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 8 tgaggtagtaggttgtatagt 28
|||||||||||||||||||||
Sbjct: 7 tgaggtagtaggttgtatagt 27
>RF00027;let-7;AANH01006181.1/186487-186407 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 81
Score = 42.1 bits (21), Expect = 0.001
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 8 tgaggtagtaggttgtatagt 28
|||||||||||||||||||||
Sbjct: 7 tgaggtagtaggttgtatagt 27
>RF00027;let-7;AANH01007473.1/5803-5888 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 86
Score = 42.1 bits (21), Expect = 0.001
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 8 tgaggtagtaggttgtatagt 28
|||||||||||||||||||||
Sbjct: 7 tgaggtagtaggttgtatagt 27
>RF00027;let-7;BAAF04050050.1/5012-4932 8090:Oryzias latipes
(Japanese medaka)
Length = 81
Score = 42.1 bits (21), Expect = 0.001
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 8 tgaggtagtaggttgtatagt 28
|||||||||||||||||||||
Sbjct: 7 tgaggtagtaggttgtatagt 27
>RF00027;let-7;BAAE01151389.1/288-202 8090:Oryzias latipes
(Japanese medaka)
Length = 87
Score = 42.1 bits (21), Expect = 0.001
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 8 tgaggtagtaggttgtatagt 28
|||||||||||||||||||||
Sbjct: 7 tgaggtagtaggttgtatagt 27
>RF00027;let-7;BAAE01055973.1/4881-4962 8090:Oryzias latipes
(Japanese medaka)
Length = 82
Score = 42.1 bits (21), Expect = 0.001
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 8 tgaggtagtaggttgtatagt 28
|||||||||||||||||||||
Sbjct: 7 tgaggtagtaggttgtatagt 27
>RF00027;let-7;BAAF04096587.1/14029-13948 8090:Oryzias latipes
(Japanese medaka)
Length = 82
Score = 42.1 bits (21), Expect = 0.001
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 8 tgaggtagtaggttgtatagt 28
|||||||||||||||||||||
Sbjct: 7 tgaggtagtaggttgtatagt 27
>RF00027;let-7;AAVX01108779.1/886-806 7868:Callorhinchus milii
(ghost shark)
Length = 81
Score = 42.1 bits (21), Expect = 0.001
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 8 tgaggtagtaggttgtatagt 28
|||||||||||||||||||||
Sbjct: 7 tgaggtagtaggttgtatagt 27
>RF00027;let-7;AAVX01007479.1/3161-3085 7868:Callorhinchus milii
(ghost shark)
Length = 77
Score = 42.1 bits (21), Expect = 0.001
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 8 tgaggtagtaggttgtatagt 28
|||||||||||||||||||||
Sbjct: 7 tgaggtagtaggttgtatagt 27
>RF00027;let-7;AAVX01338774.1/620-544 7868:Callorhinchus milii
(ghost shark)
Length = 77
Score = 42.1 bits (21), Expect = 0.001
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 8 tgaggtagtaggttgtatagt 28
|||||||||||||||||||||
Sbjct: 7 tgaggtagtaggttgtatagt 27
>RF00027;let-7;AAVX01586337.1/294-214 7868:Callorhinchus milii
(ghost shark)
Length = 81
Score = 42.1 bits (21), Expect = 0.001
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 8 tgaggtagtaggttgtatagt 28
|||||||||||||||||||||
Sbjct: 7 tgaggtagtaggttgtatagt 27
>RF00027;let-7;ABEP02005607.1/34812-34887 7739:Branchiostoma
floridae (Florida lancelet)
Length = 76
Score = 42.1 bits (21), Expect = 0.001
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 8 tgaggtagtaggttgtatagt 28
|||||||||||||||||||||
Sbjct: 7 tgaggtagtaggttgtatagt 27
>RF00027;let-7;ABEP02005607.1/36672-36748 7739:Branchiostoma
floridae (Florida lancelet)
Length = 77
Score = 42.1 bits (21), Expect = 0.001
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 8 tgaggtagtaggttgtatagt 28
|||||||||||||||||||||
Sbjct: 7 tgaggtagtaggttgtatagt 27
>RF00027;let-7;AAZX01015868.1/1070-988 7425:Nasonia vitripennis
(jewel wasp)
Length = 83
Score = 42.1 bits (21), Expect = 0.001
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 8 tgaggtagtaggttgtatagt 28
|||||||||||||||||||||
Sbjct: 7 tgaggtagtaggttgtatagt 27
