miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00672;mir-190;AAJJ01000811.1/4671-4585 7070:Tribolium castaneum
(red flour beetle)
Length = 87
Score = 170 bits (86), Expect = 2e-42
Identities = 86/86 (100%)
Strand = Plus / Plus
Query: 1 gtgagttgctataagatatgtttgatattcttggttgtatttttaattcacccaggagtc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2 gtgagttgctataagatatgtttgatattcttggttgtatttttaattcacccaggagtc 61
Query: 61 aaacatattattatagaagcgtcacg 86
||||||||||||||||||||||||||
Sbjct: 62 aaacatattattatagaagcgtcacg 87
>RF00672;mir-190;AAGH01005520.1/1141-1230 7240:Drosophila simulans
Length = 90
Score = 61.9 bits (31), Expect = 1e-09
Identities = 56/64 (87%), Gaps = 4/64 (6%)
Strand = Plus / Plus
Query: 14 agatatgtttgatattcttggttgtattttt----aattcacccaggagtcaaacatatt 69
||||||||||||||||||||||||||| || | ||||||||||| |||||||||||
Sbjct: 15 agatatgtttgatattcttggttgtatcattcaaaagttcacccaggaatcaaacatatt 74
Query: 70 atta 73
||||
Sbjct: 75 atta 78
>RF00672;mir-190;AADG05004972.1/16510-16597 7460:Apis mellifera
(honey bee)
Length = 88
Score = 60.0 bits (30), Expect = 5e-09
Identities = 57/65 (87%), Gaps = 2/65 (3%)
Strand = Plus / Plus
Query: 12 taagatatgtttgatattcttggttgtattttta--attcacccaggagtcaaacatatt 69
||||||||||||||||||||||||||| |||| | | || |||||| |||||||||||
Sbjct: 13 taagatatgtttgatattcttggttgttttttaaagaatcgaccaggaatcaaacatatt 72
Query: 70 attat 74
|||||
Sbjct: 73 attat 77
>RF00672;mir-190;AAGE02010108.1/2181-2091 7159:Aedes aegypti
(yellow fever mosquito)
Length = 91
Score = 56.0 bits (28), Expect = 7e-08
Identities = 57/65 (87%), Gaps = 5/65 (7%)
Strand = Plus / Plus
Query: 14 agatatgtttgatattcttggttgt---atttttaat--tcacccaggagtcaaacatat 68
||||||||||||||||||||||||| ||||| || |||||||||| ||||||||||
Sbjct: 15 agatatgtttgatattcttggttgttaaattttatattatcacccaggaatcaaacatat 74
Query: 69 tatta 73
|||||
Sbjct: 75 tatta 79
>RF00672;mir-190;AAZX01003157.1/32919-33003 7425:Nasonia
vitripennis (jewel wasp)
Length = 85
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 14 agatatgtttgatattcttggttgtat 40
|||||||||||||||||||||||||||
Sbjct: 15 agatatgtttgatattcttggttgtat 41
>RF00672;mir-190;BABH01038078.1/4948-5036 7091:Bombyx mori
(domestic silkworm)
Length = 89
Score = 52.0 bits (26), Expect = 1e-06
Identities = 51/58 (87%), Gaps = 1/58 (1%)
Strand = Plus / Plus
Query: 14 agatatgtttgatattcttggttgtat-ttttaattcacccaggagtcaaacatatta 70
||||||||||||||||||||||||| | |||| |||||| ||| ||||||||||||
Sbjct: 16 agatatgtttgatattcttggttgtttgttttggatcacccgggaatcaaacatatta 73
>RF00672;mir-190;AAPU01011510.1/87170-87259 7230:Drosophila
mojavensis
Length = 90
Score = 52.0 bits (26), Expect = 1e-06
Identities = 56/64 (87%), Gaps = 4/64 (6%)
Strand = Plus / Plus
Query: 14 agatatgtttgatattcttggttg-tatttttaa---ttcacccaggagtcaaacatatt 69
|||||||||||||||||||||||| || || || ||||||||||| |||||||||||
Sbjct: 15 agatatgtttgatattcttggttgttacattcaaaagttcacccaggaatcaaacatatt 74
Query: 70 atta 73
||||
Sbjct: 75 atta 78
>RF00672;mir-190;AAZO01006982.1/10545-10459 121224:Pediculus
humanus corporis (human body louse)
Length = 87
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 14 agatatgtttgatattcttggttgt 38
|||||||||||||||||||||||||
Sbjct: 15 agatatgtttgatattcttggttgt 39
>RF00672;mir-190;ABLF01005497.1/9822-9738 7029:Acyrthosiphon pisum
(pea aphid)
Length = 85
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 14 agatatgtttgatattcttggttgt 38
|||||||||||||||||||||||||
Sbjct: 15 agatatgtttgatattcttggttgt 39
>RF00672;mir-190;AAAB01008807.1/2608463-2608553 180454:Anopheles
gambiae str. PEST
Length = 91
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 14 agatatgtttgatattcttggttgt 38
|||||||||||||||||||||||||
Sbjct: 15 agatatgtttgatattcttggttgt 39
>RF00672;mir-190;ABJB010542931.1/4708-4623 6945:Ixodes scapularis
(black-legged tick)
Length = 86
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 14 agatatgtttgatattcttggttgt 38
|||||||||||||||||||||||||
Sbjct: 16 agatatgtttgatattcttggttgt 40
