miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00679;mir-210;AAJJ01000173.1/48564-48466 7070:Tribolium
castaneum (red flour beetle)
Length = 99
Score = 151 bits (76), Expect = 1e-36
Identities = 76/76 (100%)
Strand = Plus / Plus
Query: 1 ctcactgcagctgctggacgctgcacaagattagatattttagaactcttgtgcgtgtga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7 ctcactgcagctgctggacgctgcacaagattagatattttagaactcttgtgcgtgtga 66
Query: 61 cagcggctattgtggg 76
||||||||||||||||
Sbjct: 67 cagcggctattgtggg 82
>RF00679;mir-210;AADG05000839.1/5125-5031 7460:Apis mellifera
(honey bee)
Length = 95
Score = 61.9 bits (31), Expect = 1e-09
Identities = 57/65 (87%), Gaps = 3/65 (4%)
Strand = Plus / Plus
Query: 6 tgcagctgctggacgctgcacaagattagatattttagaactcttgtgcgtgtgacagcg 65
|||||||||||| | ||||||||||||||| || | |||||||||||||||||||||
Sbjct: 12 tgcagctgctggccactgcacaagattagacat---aagactcttgtgcgtgtgacagcg 68
Query: 66 gctat 70
|||||
Sbjct: 69 gctat 73
>RF00679;mir-210;AAGE02019443.1/85298-85204 7159:Aedes aegypti
(yellow fever mosquito)
Length = 95
Score = 61.9 bits (31), Expect = 1e-09
Identities = 65/76 (85%), Gaps = 4/76 (5%)
Strand = Plus / Plus
Query: 1 ctcactgcagctgctggacgctgcacaagattagatattttagaactcttgtgcgtgtga 60
|||| ||||||||||| | |||||||||||||||| || ||||||||||||||||
Sbjct: 7 ctcattgcagctgctgaccactgcacaagattagat----tatgactcttgtgcgtgtga 62
Query: 61 cagcggctattgtggg 76
|| |||||||||||||
Sbjct: 63 caacggctattgtggg 78
>RF00679;mir-210;BABH01000454.1/26338-26435 7091:Bombyx mori
(domestic silkworm)
Length = 98
Score = 60.0 bits (30), Expect = 4e-09
Identities = 57/66 (86%)
Strand = Plus / Plus
Query: 7 gcagctgctggacgctgcacaagattagatattttagaactcttgtgcgtgtgacagcgg 66
||||||||||| | |||||||||||||| | || ||||||||||||||||||||||
Sbjct: 13 gcagctgctggccactgcacaagattagtcaagtttatactcttgtgcgtgtgacagcgg 72
Query: 67 ctattg 72
||||||
Sbjct: 73 ctattg 78
>RF00679;mir-210;AANI01015309.1/4850-4756 7244:Drosophila virilis
Length = 95
Score = 60.0 bits (30), Expect = 4e-09
Identities = 59/68 (86%), Gaps = 3/68 (4%)
Strand = Plus / Plus
Query: 6 tgcagctgctggacgctgcacaagattagatattttagaactcttgtgcgtgtgacagcg 65
|||||||||||| | ||||||||||||||| | | |||||||||||||||||||||
Sbjct: 12 tgcagctgctggccactgcacaagattagac---tcaagactcttgtgcgtgtgacagcg 68
Query: 66 gctattgt 73
||||||||
Sbjct: 69 gctattgt 76
>RF00679;mir-210;AAPT01021333.1/33432-33528 7222:Drosophila
grimshawi
Length = 97
Score = 58.0 bits (29), Expect = 2e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 45 actcttgtgcgtgtgacagcggctattgt 73
|||||||||||||||||||||||||||||
Sbjct: 50 actcttgtgcgtgtgacagcggctattgt 78
>RF00679;mir-210;ABJB010428283.1/1369-1447 6945:Ixodes scapularis
(black-legged tick)
Length = 79
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 47 tcttgtgcgtgtgacagcggctattg 72
||||||||||||||||||||||||||
Sbjct: 42 tcttgtgcgtgtgacagcggctattg 67
>RF00679;mir-210;AAAB01008958.1/106879-106786 180454:Anopheles
gambiae str. PEST
Length = 94
Score = 48.1 bits (24), Expect = 2e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 45 actcttgtgcgtgtgacagcggctattgtggg 76
|||||||||||||||||| |||||||| ||||
Sbjct: 47 actcttgtgcgtgtgacaacggctattatggg 78
