miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>37836_tca-mir-2796:mirbase
Length = 158
Score = 313 bits (158), Expect = 2e-86
Identities = 158/158 (100%)
Strand = Plus / Plus
Query: 1 atcgagctttcggtgcagaagccgctattaacgtggtgacgcaagagtaggggtttcttt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 atcgagctttcggtgcagaagccgctattaacgtggtgacgcaagagtaggggtttcttt 60
Query: 61 cggcctccagcggataataaagagttgtaggccggcggaaactacttgcttttacgttgc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 cggcctccagcggataataaagagttgtaggccggcggaaactacttgcttttacgttgc 120
Query: 121 attaccttcgctgcggcttcccgtcaatgatgcgtttt 158
||||||||||||||||||||||||||||||||||||||
Sbjct: 121 attaccttcgctgcggcttcccgtcaatgatgcgtttt 158
>37676_nvi-mir-2796:mirbase
Length = 85
Score = 56.0 bits (28), Expect = 8e-09
Identities = 55/63 (87%), Gaps = 2/63 (3%)
Strand = Plus / Plus
Query: 48 taggggtttctttcggcctccagcggataataaagagttgtaggccggcggaaactactt 107
||||||||||| |||||||||||| | ||| | || ||||||||||||||||||||||
Sbjct: 14 taggggtttctatcggcctccagcagctaagacagc--tgtaggccggcggaaactactt 71
Query: 108 gct 110
|||
Sbjct: 72 gct 74
>35415_ame-mir-2796:mirbase
Length = 128
Score = 54.0 bits (27), Expect = 3e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 84 gttgtaggccggcggaaactacttgct 110
|||||||||||||||||||||||||||
Sbjct: 68 gttgtaggccggcggaaactacttgct 94
>35680_bmo-mir-2796:mirbase
Length = 79
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 86 tgtaggccggcggaaactacttgc 109
||||||||||||||||||||||||
Sbjct: 46 tgtaggccggcggaaactacttgc 69
>35681_bmo-mir-2796:mirbase
Length = 79
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 86 tgtaggccggcggaaactacttgc 109
||||||||||||||||||||||||
Sbjct: 46 tgtaggccggcggaaactacttgc 69
>35101_api-mir-2796:mirbase
Length = 63
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 85 ttgtaggccggcggaaactact 106
||||||||||||||||||||||
Sbjct: 40 ttgtaggccggcggaaactact 61
