miRNEST 2.0, an integrative microRNA resource :: BLAST
>54930_zma-miR159a:pmrd
Length = 246
Score = 414 bits (209), Expect = e-116
Identities = 240/248 (96%), Gaps = 3/248 (1%)
Strand = Plus / Plus
Query: 2 tcgatggtttgggtttgaagcggagctcctatcattccaatgaagggtcgttccgaaggg 61
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tcgatgctttgggtttgaagcggagctcctatcattccaatgaagggtcgttccgaaggg 60
Query: 62 ctggttccgctgctcgttcatggttcccactatcctatctcatcatgtgtatgcatgtat 121
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 61 ctggttccgctgctcgttcatggttcccactatcctatctcatcatgtgtatatatgtaa 120
Query: 122 tccat-ggggagggtttctctctcgtctttgagataggcttgtggtttgcatgaccgagg 180
||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 tccatgggggagggtt--tctctcgtctttgagataggcttgtggtttgcatgaccgagg 178
Query: 181 agctgcaccgcccccttgctggccgctctttggattgaagggagctctgcatcctggtcc 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 179 agctgcaccgcccccttgctggccgctctttggattgaagggagctctgcatcctgatcc 238
Query: 241 acccctcc 248
||||||||
Sbjct: 239 acccctcc 246
>54628_sof-miR159a:pmrd
Length = 265
Score = 180 bits (91), Expect = 3e-46
Identities = 97/99 (97%)
Strand = Plus / Plus
Query: 143 tcgtctttgagataggcttgtggtttgcatgaccgaggagctgcaccgcccccttgctgg 202
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 160 tcgtctttgagataggcttgtggtttgcatgaccgaggagctgcaccgtccccttgctgg 219
Query: 203 ccgctctttggattgaagggagctctgcatcctggtcca 241
|||||||||||||||||||||||||||||||||| ||||
Sbjct: 220 ccgctctttggattgaagggagctctgcatcctgatcca 258
Score = 151 bits (76), Expect = 3e-37
Identities = 95/100 (95%), Gaps = 1/100 (1%)
Strand = Plus / Plus
Query: 10 ttgggtttgaagcggagctcctatcattccaatgaagggtcgttccgaagggctggttcc 69
|||| |||||||||||||||||||||||||||||||||| ||||| |||||| || ||||
Sbjct: 9 ttggatttgaagcggagctcctatcattccaatgaagggccgttctgaagggttg-ttcc 67
Query: 70 gctgctcgttcatggttcccactatcctatctcatcatgt 109
||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 gctgctcgttcatggttcccactatcctatctcatcatgt 107
>54629_sof-miR159b:pmrd
Length = 266
Score = 178 bits (90), Expect = 1e-45
Identities = 93/94 (98%)
Strand = Plus / Plus
Query: 143 tcgtctttgagataggcttgtggtttgcatgaccgaggagctgcaccgcccccttgctgg 202
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 161 tcgtctttgagataggcttgtggtttgcatgaccgaggagctgcaccgtccccttgctgg 220
Query: 203 ccgctctttggattgaagggagctctgcatcctg 236
||||||||||||||||||||||||||||||||||
Sbjct: 221 ccgctctttggattgaagggagctctgcatcctg 254
Score = 159 bits (80), Expect = 1e-39
Identities = 96/100 (96%), Gaps = 1/100 (1%)
Strand = Plus / Plus
Query: 10 ttgggtttgaagcggagctcctatcattccaatgaagggtcgttccgaagggctggttcc 69
|||| |||||||||||||||||||||||||||||||||| ||||| |||||| |||||||
Sbjct: 9 ttggatttgaagcggagctcctatcattccaatgaagggccgttctgaaggg-tggttcc 67
Query: 70 gctgctcgttcatggttcccactatcctatctcatcatgt 109
||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 gctgctcgttcatggttcccactatcctatctcatcatgt 107
>54632_sof-miR159e:pmrd
Length = 264
Score = 159 bits (80), Expect = 1e-39
Identities = 96/100 (96%), Gaps = 1/100 (1%)
Strand = Plus / Plus
Query: 10 ttgggtttgaagcggagctcctatcattccaatgaagggtcgttccgaagggctggttcc 69
|||| |||||||||||||||||||||||||||||||||| ||||| |||||| |||||||
Sbjct: 8 ttggatttgaagcggagctcctatcattccaatgaagggccgttctgaaggg-tggttcc 66
Query: 70 gctgctcgttcatggttcccactatcctatctcatcatgt 109
||||||||||||||||||||||||||||||||||||||||
Sbjct: 67 gctgctcgttcatggttcccactatcctatctcatcatgt 106
Score = 147 bits (74), Expect = 5e-36
Identities = 83/86 (96%)
Strand = Plus / Plus
Query: 143 tcgtctttgagataggcttgtggtttgcatgaccgaggagctgcaccgcccccttgctgg 202
|||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct: 159 tcgtctttgagataggcttgtggtttgcatgaccgaagagctgcaccgtccccttgctgg 218
Query: 203 ccgctctttggattgaagggagctct 228
||||||||||||||||| ||||||||
Sbjct: 219 ccgctctttggattgaaaggagctct 244
>54631_sof-miR159d:pmrd
Length = 265
Score = 157 bits (79), Expect = 5e-39
Identities = 94/99 (94%)
Strand = Plus / Plus
Query: 143 tcgtctttgagataggcttgtggtttgcatgaccgaggagctgcaccgcccccttgctgg 202
|||||| ||||||| ||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct: 160 tcgtctatgagatacgcttgtggtttgcatgaccgatgagctgcaccgtccccttgctgg 219
Query: 203 ccgctctttggattgaagggagctctgcatcctggtcca 241
|||||||||||||||||||||||||||||||||| ||||
Sbjct: 220 ccgctctttggattgaagggagctctgcatcctgatcca 258
Score = 151 bits (76), Expect = 3e-37
Identities = 95/100 (95%), Gaps = 1/100 (1%)
Strand = Plus / Plus
Query: 10 ttgggtttgaagcggagctcctatcattccaatgaagggtcgttccgaagggctggttcc 69
|||| |||||||||||||||||||||||||||||||||| ||||| |||||| || ||||
Sbjct: 9 ttggatttgaagcggagctcctatcattccaatgaagggccgttctgaagggttg-ttcc 67
Query: 70 gctgctcgttcatggttcccactatcctatctcatcatgt 109
||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 gctgctcgttcatggttcccactatcctatctcatcatgt 107
>51338_pgl-miR159:pmrd
Length = 226
Score = 145 bits (73), Expect = 2e-35
Identities = 79/81 (97%)
Strand = Plus / Plus
Query: 149 ttgagataggcttgtggtttgcatgaccgaggagctgcaccgcccccttgctggccgctc 208
||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||
Sbjct: 146 ttgagataggcttgtggcttgcatgaccgaggagctgcaccgtccccttgctggccgctc 205
Query: 209 tttggattgaagggagctctg 229
|||||||||||||||||||||
Sbjct: 206 tttggattgaagggagctctg 226
Score = 85.7 bits (43), Expect = 1e-17
Identities = 73/83 (87%)
Strand = Plus / Plus
Query: 22 cggagctcctatcattccaatgaagggtcgttccgaagggctggttccgctgctcgttca 81
|||||||||||||||||||||||| ||| ||| ||| |||| | ||||||||||||
Sbjct: 1 cggagctcctatcattccaatgaaaggttgtttttgtgggttggtacagctgctcgttca 60
Query: 82 tggttcccactatcctatctcat 104
|||||||||||||||||||||||
Sbjct: 61 tggttcccactatcctatctcat 83
>54931_zma-miR159b:pmrd
Length = 221
Score = 111 bits (56), Expect = 3e-25
Identities = 83/92 (90%)
Strand = Plus / Plus
Query: 149 ttgagataggcttgtggtttgcatgaccgaggagctgcaccgcccccttgctggccgctc 208
||||||| |||||||||||||||||||||||||||||||| |||| | | || |||||
Sbjct: 122 ttgagatgggcttgtggtttgcatgaccgaggagctgcacgtccccttcgttgaccgctg 181
Query: 209 tttggattgaagggagctctgcatcctggtcc 240
||||||||||||||||||||||||| ||||||
Sbjct: 182 tttggattgaagggagctctgcatcttggtcc 213
Score = 58.0 bits (29), Expect = 3e-09
Identities = 35/37 (94%)
Strand = Plus / Plus
Query: 70 gctgctcgttcatggttcccactatcctatctcatca 106
||||||||||||||||||||||| ||| |||||||||
Sbjct: 68 gctgctcgttcatggttcccactgtcccatctcatca 104
>54392_sar-miR159:pmrd
Length = 175
Score = 109 bits (55), Expect = 1e-24
Identities = 73/79 (92%)
Strand = Plus / Plus
Query: 151 gagataggcttgtggtttgcatgaccgaggagctgcaccgcccccttgctggccgctctt 210
||||||||| ||||| ||||||||||||||||| ||| || ||||| |||||||||||||
Sbjct: 97 gagataggcctgtggcttgcatgaccgaggagccgcatcgtcccctcgctggccgctctt 156
Query: 211 tggattgaagggagctctg 229
|||||||||||||||||||
Sbjct: 157 tggattgaagggagctctg 175
Score = 81.8 bits (41), Expect = 2e-16
Identities = 69/77 (89%), Gaps = 1/77 (1%)
Strand = Plus / Plus
Query: 23 ggagctcctatcattccaatgaagggtcgttcc-gaagggctggttccgctgctcgttca 81
||||||||||||||||||||||| |||| | | |||||| |||| | ||||||||||||
Sbjct: 2 ggagctcctatcattccaatgaaaggtcttgctagaaggggtggtacagctgctcgttca 61
Query: 82 tggttcccactatccta 98
|||||||||||||||||
Sbjct: 62 tggttcccactatccta 78
>54673_tae-miR159a:pmrd
Length = 177
Score = 95.6 bits (48), Expect = 2e-20
Identities = 72/80 (90%)
Strand = Plus / Plus
Query: 23 ggagctcctatcattccaatgaagggtcgttccgaagggctggttccgctgctcgttcat 82
|||||||||||||||||||||||||||| | |||||| | || | |||||||||||||
Sbjct: 3 ggagctcctatcattccaatgaagggtctaccggaagggtttgtgcagctgctcgttcat 62
Query: 83 ggttcccactatcctatctc 102
||||||||||||||||||||
Sbjct: 63 ggttcccactatcctatctc 82
Score = 83.8 bits (42), Expect = 6e-17
Identities = 72/82 (87%)
Strand = Plus / Plus
Query: 151 gagataggcttgtggtttgcatgaccgaggagctgcaccgcccccttgctggccgctctt 210
|||| |||| ||||||||||||||||||||||| || || |||| |||| ||||| ||
Sbjct: 96 gagagaggcctgtggtttgcatgaccgaggagccgcttcgatccctcgctgaccgctgtt 155
Query: 211 tggattgaagggagctctgcat 232
||||||||||||||||||||||
Sbjct: 156 tggattgaagggagctctgcat 177
>48820_osa-miR159b:pmrd
Length = 188
Score = 93.7 bits (47), Expect = 6e-20
Identities = 74/83 (89%)
Strand = Plus / Plus
Query: 151 gagataggcttgtggtttgcatgaccgaggagctgcaccgcccccttgctggccgctctt 210
|||||||||||||||||||||||||| |||||| | | | | |||||||| || |||||
Sbjct: 100 gagataggcttgtggtttgcatgaccaaggagccgaatcaactccttgctgaccactctt 159
Query: 211 tggattgaagggagctctgcatc 233
|||||||||||||||||||||||
Sbjct: 160 tggattgaagggagctctgcatc 182
Score = 56.0 bits (28), Expect = 1e-08
Identities = 74/88 (84%), Gaps = 1/88 (1%)
Strand = Plus / Plus
Query: 17 tgaagcggagctcctatcattccaatgaagggtcgttccgaagggctggttccgctgctc 76
||||| ||||||||| || |||||||||| ||| || |||||| || | | ||||||
Sbjct: 6 tgaagtggagctcctttcgttccaatgaaaggtttatctgaaggg-tgatacagctgctt 64
Query: 77 gttcatggttcccactatcctatctcat 104
|||||||||||||||||| |||||||||
Sbjct: 65 gttcatggttcccactattctatctcat 92
>48657_hvv-miR159b:pmrd
Length = 174
Score = 87.7 bits (44), Expect = 4e-18
Identities = 71/80 (88%)
Strand = Plus / Plus
Query: 23 ggagctcctatcattccaatgaagggtcgttccgaagggctggttccgctgctcgttcat 82
|||||||||||||||||||||||||||| | |||||| | || | |||||| ||||||
Sbjct: 2 ggagctcctatcattccaatgaagggtctaccggaagggtttgtgcagctgcttgttcat 61
Query: 83 ggttcccactatcctatctc 102
||||||||||||||||||||
Sbjct: 62 ggttcccactatcctatctc 81
Score = 85.7 bits (43), Expect = 1e-17
Identities = 70/79 (88%)
Strand = Plus / Plus
Query: 151 gagataggcttgtggtttgcatgaccgaggagctgcaccgcccccttgctggccgctctt 210
|||||||||||||||||||||||| |||||||| || || |||| |||| ||||| ||
Sbjct: 96 gagataggcttgtggtttgcatgatcgaggagccgcttcgatccctcgctgaccgctgtt 155
Query: 211 tggattgaagggagctctg 229
|||||||||||||||||||
Sbjct: 156 tggattgaagggagctctg 174
>54934_zma-miR159e:pmrd
Length = 203
Score = 85.7 bits (43), Expect = 1e-17
Identities = 74/83 (89%), Gaps = 1/83 (1%)
Strand = Plus / Plus
Query: 149 ttgagataggcttgtggtttgcatgaccgaggagctgcaccgccccctt-gctggccgct 207
||||||| |||||||||||||||||||||||||||||| || |||||| | || |||||
Sbjct: 121 ttgagatgggcttgtggtttgcatgaccgaggagctgcctcgtccccttcgttgaccgct 180
Query: 208 ctttggattgaagggagctctgc 230
|||||| |||||||||||||||
Sbjct: 181 gtttggagtgaagggagctctgc 203
Score = 58.0 bits (29), Expect = 3e-09
Identities = 35/37 (94%)
Strand = Plus / Plus
Query: 70 gctgctcgttcatggttcccactatcctatctcatca 106
||||||||||||||||||||||| ||| |||||||||
Sbjct: 50 gctgctcgttcatggttcccactgtcccatctcatca 86
>54937_zma-miR159m:pmrd
Length = 457
Score = 73.8 bits (37), Expect = 6e-14
Identities = 40/41 (97%)
Strand = Plus / Plus
Query: 209 tttggattgaagggagctctgcatcctggtccacccctcca 249
|||||||||||||||||||||||||||| ||||||||||||
Sbjct: 1 tttggattgaagggagctctgcatcctgatccacccctcca 41
>54653_spr-miR159:pmrd
Length = 392
Score = 58.0 bits (29), Expect = 3e-09
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 209 tttggattgaagggagctctgcatcctggtcca 241
|||||||||||||||||||||||||||| ||||
Sbjct: 1 tttggattgaagggagctctgcatcctgatcca 33
>54674_tae-miR159b:pmrd
Length = 255
Score = 56.0 bits (28), Expect = 1e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 206 ctctttggattgaagggagctctgcatc 233
||||||||||||||||||||||||||||
Sbjct: 227 ctctttggattgaagggagctctgcatc 254
>48819_osa-miR159a:pmrd
Length = 272
Score = 56.0 bits (28), Expect = 1e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 206 ctctttggattgaagggagctctgcatc 233
||||||||||||||||||||||||||||
Sbjct: 239 ctctttggattgaagggagctctgcatc 266
>48796_oru-miR159:pmrd
Length = 274
Score = 56.0 bits (28), Expect = 1e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 206 ctctttggattgaagggagctctgcatc 233
||||||||||||||||||||||||||||
Sbjct: 239 ctctttggattgaagggagctctgcatc 266
>48656_hvv-miR159a:pmrd
Length = 303
Score = 50.1 bits (25), Expect = 8e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 209 tttggattgaagggagctctgcatc 233
|||||||||||||||||||||||||
Sbjct: 1 tttggattgaagggagctctgcatc 25
>48825_osa-miR159m:pmrd
Length = 249
Score = 48.1 bits (24), Expect = 3e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 206 ctctttggattgaagggagctctg 229
||||||||||||||||||||||||
Sbjct: 226 ctctttggattgaagggagctctg 249
>46932_ath-miR159b:pmrd
Length = 196
Score = 46.1 bits (23), Expect = 1e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 207 tctttggattgaagggagctctgcatc 233
|||||||||||||||||||||| ||||
Sbjct: 166 tctttggattgaagggagctcttcatc 192
>54378_pvu-miR159:pmrd
Length = 174
Score = 44.1 bits (22), Expect = 5e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 207 tctttggattgaagggagctct 228
||||||||||||||||||||||
Sbjct: 151 tctttggattgaagggagctct 172
>54377_pvu-miR159:pmrd
Length = 174
Score = 44.1 bits (22), Expect = 5e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 207 tctttggattgaagggagctct 228
||||||||||||||||||||||
Sbjct: 151 tctttggattgaagggagctct 172
>48699_mtr-miR159a:pmrd
Length = 168
Score = 44.1 bits (22), Expect = 5e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 207 tctttggattgaagggagctct 228
||||||||||||||||||||||
Sbjct: 146 tctttggattgaagggagctct 167
>48539_gma-miR159a:pmrd
Length = 214
Score = 44.1 bits (22), Expect = 5e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 207 tctttggattgaagggagctct 228
||||||||||||||||||||||
Sbjct: 173 tctttggattgaagggagctct 194
>48395_bra-miR159a:pmrd
Length = 185
Score = 44.1 bits (22), Expect = 5e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 207 tctttggattgaagggagctct 228
||||||||||||||||||||||
Sbjct: 161 tctttggattgaagggagctct 182
>48339_bna-miR159:pmrd
Length = 183
Score = 44.1 bits (22), Expect = 5e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 207 tctttggattgaagggagctct 228
||||||||||||||||||||||
Sbjct: 159 tctttggattgaagggagctct 180
>46931_ath-miR159a:pmrd
Length = 184
Score = 44.1 bits (22), Expect = 5e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 207 tctttggattgaagggagctct 228
||||||||||||||||||||||
Sbjct: 161 tctttggattgaagggagctct 182
>48701_mtr-miR159c:pmrd
Length = 44
Score = 42.1 bits (21), Expect = 2e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 209 tttggattgaagggagctctgcatc 233
|||||||||||||||||||| ||||
Sbjct: 1 tttggattgaagggagctctacatc 25
>54777_vvi-miR159c:pmrd
Length = 190
Score = 40.1 bits (20), Expect = 8e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 209 tttggattgaagggagctct 228
||||||||||||||||||||
Sbjct: 160 tttggattgaagggagctct 179
>54540_sly-miR159:pmrd
Length = 177
Score = 40.1 bits (20), Expect = 8e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 209 tttggattgaagggagctct 228
||||||||||||||||||||
Sbjct: 157 tttggattgaagggagctct 176
>52093_ptc-miRf10271-akr:pmrd
Length = 174
Score = 40.1 bits (20), Expect = 8e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 209 tttggattgaagggagctct 228
||||||||||||||||||||
Sbjct: 149 tttggattgaagggagctct 168
>51604_ptc-miR159c:pmrd
Length = 183
Score = 40.1 bits (20), Expect = 8e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 209 tttggattgaagggagctct 228
||||||||||||||||||||
Sbjct: 154 tttggattgaagggagctct 173
>51603_ptc-miR159b:pmrd
Length = 187
Score = 40.1 bits (20), Expect = 8e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 209 tttggattgaagggagctct 228
||||||||||||||||||||
Sbjct: 158 tttggattgaagggagctct 177
>51602_ptc-miR159a:pmrd
Length = 183
Score = 40.1 bits (20), Expect = 8e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 209 tttggattgaagggagctct 228
||||||||||||||||||||
Sbjct: 154 tttggattgaagggagctct 173
>48728_mtr-miR319b:pmrd
Length = 42
Score = 40.1 bits (20), Expect = 8e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 210 ttggattgaagggagctctgcatc 233
||||||||||||||||||| ||||
Sbjct: 1 ttggattgaagggagctctacatc 24
>48686_ltu-miR159:pmrd
Length = 345
Score = 40.1 bits (20), Expect = 8e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 209 tttggattgaagggagctct 228
||||||||||||||||||||
Sbjct: 1 tttggattgaagggagctct 20