miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00638;MIR159;EU955086.1/295-527 4577:Zea mays
Length = 233
Score = 363 bits (183), Expect = e-100
Identities = 224/235 (95%), Gaps = 7/235 (2%)
Strand = Plus / Plus
Query: 12 gggtttgaagcggagctcctatcattccaatgaagggtcgttccgaagggctggttccgc 71
||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||
Sbjct: 1 gggtttgaagcggagctcctatcattccaatgaagggtcgtaccgaagggccggttccgc 60
Query: 72 tgctcgttcatggttcccactatcctatctcatcatgtgtat----gcatgtattccatg 127
|||||||||||||||||||||||||||||||||||||||||| | ||||||||||||
Sbjct: 61 tgctcgttcatggttcccactatcctatctcatcatgtgtatatatgtatgtattccatg 120
Query: 128 ggg-agggtttctctctcgtctttgagataggcttgtggtttgcatgaccgaggagctgc 186
||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 ggggagggtttctc--tcgtctttgagataggcttgtggtttgcatgaccgaggagctgc 178
Query: 187 accgcccccttgctggccgctctttggattgaagggagctctgcatcctggtcca 241
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 179 accgcccccttgctggccgctctttggattgaagggagctctgcatcctgatcca 233
>RF00638;MIR159;ABXC01001787.1/21430-21187 4558:Sorghum bicolor
(sorghum)
Length = 244
Score = 176 bits (89), Expect = 1e-43
Identities = 95/97 (97%)
Strand = Plus / Plus
Query: 145 gtctttgagataggcttgtggtttgcatgaccgaggagctgcaccgcccccttgctggcc 204
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 148 gtctttgagataggcttgtggtttgcatgaccgaggagctgcaccgtccccttgctggcc 207
Query: 205 gctctttggattgaagggagctctgcatcctggtcca 241
|||||||||||||||||||||||||||||||| ||||
Sbjct: 208 gctctttggattgaagggagctctgcatcctgatcca 244
Score = 111 bits (56), Expect = 5e-24
Identities = 84/92 (91%), Gaps = 1/92 (1%)
Strand = Plus / Plus
Query: 18 gaagcggagctcctatcattccaatgaagggtcgttccgaagggctggttccgctgctcg 77
|||||| |||||||||||||||||||||||| | || | ||| |||||||||||||||
Sbjct: 7 gaagcgaagctcctatcattccaatgaagggcccttttcatggg-tggttccgctgctcg 65
Query: 78 ttcatggttcccactatcctatctcatcatgt 109
||||||||||||||||||||||||||||||||
Sbjct: 66 ttcatggttcccactatcctatctcatcatgt 97
>RF00638;MIR159;EU869041.1/17-203 39947:Oryza sativa Japonica Group
Length = 187
Score = 93.7 bits (47), Expect = 1e-18
Identities = 74/83 (89%)
Strand = Plus / Plus
Query: 151 gagataggcttgtggtttgcatgaccgaggagctgcaccgcccccttgctggccgctctt 210
|||||||||||||||||||||||||| |||||| | | | | |||||||| || |||||
Sbjct: 97 gagataggcttgtggtttgcatgaccaaggagccgaatcaactccttgctgaccactctt 156
Query: 211 tggattgaagggagctctgcatc 233
|||||||||||||||||||||||
Sbjct: 157 tggattgaagggagctctgcatc 179
Score = 54.0 bits (27), Expect = 1e-06
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 70 gctgctcgttcatggttcccactatcctatctcat 104
|||||| |||||||||||||||||| |||||||||
Sbjct: 55 gctgcttgttcatggttcccactattctatctcat 89
>RF00638;MIR159;EU947090.1/674-895 4577:Zea mays
Length = 222
Score = 91.7 bits (46), Expect = 4e-18
Identities = 77/86 (89%), Gaps = 1/86 (1%)
Strand = Plus / Plus
Query: 149 ttgagataggcttgtggtttgcatgaccgaggagctgcaccgccccctt-gctggccgct 207
||||||| |||||||||||||||||||||||||||||| || |||||| | || |||||
Sbjct: 129 ttgagatgggcttgtggtttgcatgaccgaggagctgcctcgtccccttcgttgaccgct 188
Query: 208 ctttggattgaagggagctctgcatc 233
|||||| ||||||||||||||||||
Sbjct: 189 gtttggagtgaagggagctctgcatc 214
Score = 58.0 bits (29), Expect = 6e-08
Identities = 35/37 (94%)
Strand = Plus / Plus
Query: 70 gctgctcgttcatggttcccactatcctatctcatca 106
||||||||||||||||||||||| ||| |||||||||
Sbjct: 58 gctgctcgttcatggttcccactgtcccatctcatca 94
>RF00638;MIR159;ABXC01001787.1/15180-14953 4558:Sorghum bicolor
(sorghum)
Length = 228
Score = 85.7 bits (43), Expect = 3e-16
Identities = 74/83 (89%), Gaps = 1/83 (1%)
Strand = Plus / Plus
Query: 149 ttgagataggcttgtggtttgcatgaccgaggagctgcaccg-cccccttgctggccgct 207
||||||| ||| ||||||||||||||||||||||||||| || |||| ||| | |||||
Sbjct: 135 ttgagatgggcctgtggtttgcatgaccgaggagctgcatcgtcccctttgtcgaccgct 194
Query: 208 ctttggattgaagggagctctgc 230
| |||||||||||||||||||||
Sbjct: 195 cgttggattgaagggagctctgc 217
Score = 65.9 bits (33), Expect = 3e-10
Identities = 36/37 (97%)
Strand = Plus / Plus
Query: 70 gctgctcgttcatggttcccactatcctatctcatca 106
||||||||||||||||||||||||||| |||||||||
Sbjct: 58 gctgctcgttcatggttcccactatcccatctcatca 94
>RF00638;MIR159;AP008207.1/17678032-17678305 39947:Oryza sativa
Japonica Group
Length = 274
Score = 56.0 bits (28), Expect = 2e-07
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 206 ctctttggattgaagggagctctgcatc 233
||||||||||||||||||||||||||||
Sbjct: 239 ctctttggattgaagggagctctgcatc 266
>RF00638;MIR159;AC034107.5/26716-26923 3702:Arabidopsis thaliana
(thale cress)
Length = 208
Score = 46.1 bits (23), Expect = 2e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 207 tctttggattgaagggagctctgcatc 233
|||||||||||||||||||||| ||||
Sbjct: 174 tctttggattgaagggagctcttcatc 200
>RF00638;MIR159;EU548541.1/320-117 3702:Arabidopsis thaliana (thale
cress)
Length = 204
Score = 46.1 bits (23), Expect = 2e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 207 tctttggattgaagggagctctgcatc 233
|||||||||||||||||||||| ||||
Sbjct: 170 tctttggattgaagggagctctacatc 196
