miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00237;mir-9;AAQA01000025.1/15457-15396 6279:Brugia malayi
Length = 62
Score = 123 bits (62), Expect = 4e-28
Identities = 62/62 (100%)
Strand = Plus / Plus
Query: 13 tactttggttatctagctgtatgagtaagttactggcttcataaagctaggttaccaaag 72
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tactttggttatctagctgtatgagtaagttactggcttcataaagctaggttaccaaag 60
Query: 73 ct 74
||
Sbjct: 61 ct 62
>RF00237;mir-9;ABIR01000787.1/71736-71795 6334:Trichinella
spiralis
Length = 60
Score = 61.9 bits (31), Expect = 1e-09
Identities = 55/61 (90%), Gaps = 4/61 (6%)
Strand = Plus / Plus
Query: 15 ctttggttatctagctgtatgagtaagttactg-gcttcataaagctaggttaccaaagc 73
|||||||||||||||||||||||| ||||| || |||||||||||||||||||||||
Sbjct: 3 ctttggttatctagctgtatgagt---gtactgagcgtcataaagctaggttaccaaagc 59
Query: 74 t 74
|
Sbjct: 60 t 60
>RF00237;mir-9;ABJB010367147.1/2213-2272 6945:Ixodes scapularis
(black-legged tick)
Length = 60
Score = 54.0 bits (27), Expect = 3e-07
Identities = 51/58 (87%), Gaps = 2/58 (3%)
Strand = Plus / Plus
Query: 15 ctttggttatctagctgtatgagtaagttactggcttcataaagctaggttaccaaag 72
|||||||||||||||||||||||| | || | | ||||||||||||||||||||||
Sbjct: 3 ctttggttatctagctgtatgagt--gatattaacatcataaagctaggttaccaaag 58
>RF00237;mir-9;AAGD02008921.1/11473-11541 31234:Caenorhabditis
remanei
Length = 69
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 49 cttcataaagctaggttaccaaagct 74
||||||||||||||||||||||||||
Sbjct: 44 cttcataaagctaggttaccaaagct 69
>RF00237;mir-9;CAAC02000589.1/144634-144698 6238:Caenorhabditis
briggsae
Length = 65
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 49 cttcataaagctaggttaccaaagct 74
||||||||||||||||||||||||||
Sbjct: 40 cttcataaagctaggttaccaaagct 65
>RF00237;mir-9;ABEG01008189.1/7393-7325 135651:Caenorhabditis
brenneri
Length = 69
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 49 cttcataaagctaggttaccaaagct 74
||||||||||||||||||||||||||
Sbjct: 44 cttcataaagctaggttaccaaagct 69
>RF00237;mir-9;Z81467.1/13319-13384 6239:Caenorhabditis elegans
Length = 66
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 50 ttcataaagctaggttaccaaagct 74
|||||||||||||||||||||||||
Sbjct: 42 ttcataaagctaggttaccaaagct 66
>RF00237;mir-9;ABLE02000370.1/4844-4906 281687:Caenorhabditis
japonica
Length = 63
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 50 ttcataaagctaggttaccaaagct 74
|||||||||||||||||||||||||
Sbjct: 39 ttcataaagctaggttaccaaagct 63
>RF00237;mir-9;ABKE01001679.1/8647-8709 54126:Pristionchus
pacificus
Length = 63
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 50 ttcataaagctaggttaccaaagct 74
|||||||||||||||||||||||||
Sbjct: 39 ttcataaagctaggttaccaaagct 63
>RF00237;mir-9;AAJJ01000398.1/19121-19058 7070:Tribolium castaneum
(red flour beetle)
Length = 64
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 15 ctttggttatctagctgtatgagta 39
|||||||||||||||||||||||||
Sbjct: 3 ctttggttatctagctgtatgagta 27
>RF00237;mir-9;AAPN01432088.1/257-198 9258:Ornithorhynchus
anatinus (platypus)
Length = 60
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 15 ctttggttatctagctgtatgagt 38
||||||||||||||||||||||||
Sbjct: 3 ctttggttatctagctgtatgagt 26
>RF00237;mir-9;ABVD01485145.1/30-90 9358:Choloepus hoffmanni
(Hoffmann's two-fingered sloth)
Length = 61
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 15 ctttggttatctagctgtatgagt 38
||||||||||||||||||||||||
Sbjct: 3 ctttggttatctagctgtatgagt 26
>RF00237;mir-9;AAGV020387958.1/714-775 9361:Dasypus novemcinctus
(nine-banded armadillo)
Length = 62
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 15 ctttggttatctagctgtatgagt 38
||||||||||||||||||||||||
Sbjct: 3 ctttggttatctagctgtatgagt 26
>RF00237;mir-9;ABRQ01039829.1/2882-2943 9813:Procavia capensis
(cape rock hyrax)
Length = 62
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 15 ctttggttatctagctgtatgagt 38
||||||||||||||||||||||||
Sbjct: 3 ctttggttatctagctgtatgagt 26
>RF00237;mir-9;CAAK05014843.1/1888-1946 7955:Danio rerio
(zebrafish)
Length = 59
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 15 ctttggttatctagctgtatgagt 38
||||||||||||||||||||||||
Sbjct: 3 ctttggttatctagctgtatgagt 26
>RF00237;mir-9;BAAF04134102.1/794-855 8090:Oryzias latipes
(Japanese medaka)
Length = 62
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 15 ctttggttatctagctgtatgagt 38
||||||||||||||||||||||||
Sbjct: 3 ctttggttatctagctgtatgagt 26
>RF00237;mir-9;BAAF04020747.1/88-147 8090:Oryzias latipes
(Japanese medaka)
Length = 60
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 15 ctttggttatctagctgtatgagt 38
||||||||||||||||||||||||
Sbjct: 3 ctttggttatctagctgtatgagt 26
>RF00237;mir-9;BAAE01106217.1/407-468 8090:Oryzias latipes
(Japanese medaka)
Length = 62
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 15 ctttggttatctagctgtatgagt 38
||||||||||||||||||||||||
Sbjct: 3 ctttggttatctagctgtatgagt 26
>RF00237;mir-9;BAAF04047241.1/1745-1804 8090:Oryzias latipes
(Japanese medaka)
Length = 60
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 15 ctttggttatctagctgtatgagt 38
||||||||||||||||||||||||
Sbjct: 3 ctttggttatctagctgtatgagt 26
>RF00237;mir-9;AAVX01065791.1/2124-2183 7868:Callorhinchus milii
(ghost shark)
Length = 60
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 15 ctttggttatctagctgtatgagt 38
||||||||||||||||||||||||
Sbjct: 3 ctttggttatctagctgtatgagt 26
>RF00237;mir-9;ABLF01047176.1/4611-4545 7029:Acyrthosiphon pisum
(pea aphid)
Length = 67
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 15 ctttggttatctagctgtatgagt 38
||||||||||||||||||||||||
Sbjct: 3 ctttggttatctagctgtatgagt 26
>RF00237;mir-9;AAAB01008960.1/1144939-1144878 180454:Anopheles
gambiae str. PEST
Length = 62
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 15 ctttggttatctagctgtatgagt 38
||||||||||||||||||||||||
Sbjct: 3 ctttggttatctagctgtatgagt 26
>RF00237;mir-9;AAPU01011594.1/225879-225819 7230:Drosophila
mojavensis
Length = 61
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 15 ctttggttatctagctgtatgagt 38
||||||||||||||||||||||||
Sbjct: 3 ctttggttatctagctgtatgagt 26
>RF00237;mir-9;ABEP02027847.1/93613-93673 7739:Branchiostoma
floridae (Florida lancelet)
Length = 61
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 15 ctttggttatctagctgtatgag 37
|||||||||||||||||||||||
Sbjct: 3 ctttggttatctagctgtatgag 25
>RF00237;mir-9;AAST01027169.1/135-76 7240:Drosophila simulans
Length = 60
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 16 tttggttatctagctgtatgagt 38
|||||||||||||||||||||||
Sbjct: 4 tttggttatctagctgtatgagt 26
>RF00237;mir-9;ABKE01012786.1/839-779 54126:Pristionchus pacificus
Length = 61
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 15 ctttggttatctagctgtatga 36
||||||||||||||||||||||
Sbjct: 3 ctttggttatctagctgtatga 24
