miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>38533_crm-mir-71:mirbase
Length = 120
Score = 56.0 bits (28), Expect = 4e-09
Identities = 54/62 (87%), Gaps = 3/62 (4%)
Strand = Plus / Plus
Query: 21 tgaaagacatgggtagtgagacgttagaatttcaaggtcgtatcactattctgtttttcg 80
|||||||||||||||||||||||| || || ||||||||||||||||||||||||
Sbjct: 30 tgaaagacatgggtagtgagacgtcggagcctc---gtcgtatcactattctgtttttcg 86
Query: 81 cc 82
||
Sbjct: 87 cc 88
>38180_cbr-mir-71:mirbase
Length = 77
Score = 56.0 bits (28), Expect = 4e-09
Identities = 54/62 (87%), Gaps = 3/62 (4%)
Strand = Plus / Plus
Query: 21 tgaaagacatgggtagtgagacgttagaatttcaaggtcgtatcactattctgtttttcg 80
|||||||||||||||||||||||| || || ||||||||||||||||||||||||
Sbjct: 11 tgaaagacatgggtagtgagacgtcggagcctc---gtcgtatcactattctgtttttcg 67
Query: 81 cc 82
||
Sbjct: 68 cc 69
>38307_cel-mir-71:mirbase
Length = 94
Score = 56.0 bits (28), Expect = 4e-09
Identities = 54/62 (87%), Gaps = 3/62 (4%)
Strand = Plus / Plus
Query: 21 tgaaagacatgggtagtgagacgttagaatttcaaggtcgtatcactattctgtttttcg 80
|||||||||||||||||||||||| || || ||||||||||||||||||||||||
Sbjct: 16 tgaaagacatgggtagtgagacgtcggagcctc---gtcgtatcactattctgtttttcg 72
Query: 81 cc 82
||
Sbjct: 73 cc 74
>24665_bfl-mir-71:mirbase
Length = 101
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 20 gtgaaagacatgggtagtgaga 41
||||||||||||||||||||||
Sbjct: 21 gtgaaagacatgggtagtgaga 42
>34816_spu-mir-71:mirbase
Length = 101
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 20 gtgaaagacatgggtagtgaga 41
||||||||||||||||||||||
Sbjct: 21 gtgaaagacatgggtagtgaga 42
>39089_sme-mir-71c:mirbase
Length = 82
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 21 tgaaagacatgggtagtgaga 41
|||||||||||||||||||||
Sbjct: 11 tgaaagacatgggtagtgaga 31
>38742_cte-mir-71:mirbase
Length = 101
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 21 tgaaagacatgggtagtgaga 41
|||||||||||||||||||||
Sbjct: 22 tgaaagacatgggtagtgaga 42
>34966_isc-mir-71:mirbase
Length = 101
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 21 tgaaagacatgggtagtgaga 41
|||||||||||||||||||||
Sbjct: 22 tgaaagacatgggtagtgaga 42
>35006_dpu-mir-71:mirbase
Length = 101
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 21 tgaaagacatgggtagtgaga 41
|||||||||||||||||||||
Sbjct: 22 tgaaagacatgggtagtgaga 42
>35055_api-mir-71:mirbase
Length = 62
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 21 tgaaagacatgggtagtgaga 41
|||||||||||||||||||||
Sbjct: 1 tgaaagacatgggtagtgaga 21
>35359_ame-mir-71:mirbase
Length = 100
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 21 tgaaagacatgggtagtgaga 41
|||||||||||||||||||||
Sbjct: 25 tgaaagacatgggtagtgaga 45
>35532_bmo-mir-71:mirbase
Length = 119
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 21 tgaaagacatgggtagtgaga 41
|||||||||||||||||||||
Sbjct: 21 tgaaagacatgggtagtgaga 41
>37646_nvi-mir-71:mirbase
Length = 102
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 21 tgaaagacatgggtagtgaga 41
|||||||||||||||||||||
Sbjct: 26 tgaaagacatgggtagtgaga 46
>37726_tca-mir-71:mirbase
Length = 79
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 21 tgaaagacatgggtagtgaga 41
|||||||||||||||||||||
Sbjct: 10 tgaaagacatgggtagtgaga 30
>37725_tca-mir-71:mirbase
Length = 79
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 21 tgaaagacatgggtagtgaga 41
|||||||||||||||||||||
Sbjct: 10 tgaaagacatgggtagtgaga 30
>35185_aae-mir-71:mirbase
Length = 77
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 22 gaaagacatgggtagtgaga 41
||||||||||||||||||||
Sbjct: 7 gaaagacatgggtagtgaga 26
>36015_cqu-mir-71:mirbase
Length = 82
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 22 gaaagacatgggtagtgaga 41
||||||||||||||||||||
Sbjct: 7 gaaagacatgggtagtgaga 26
