miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>38486_crm-mir-1:mirbase
Length = 96
Score = 133 bits (67), Expect = 3e-32
Identities = 73/75 (97%)
Strand = Plus / Plus
Query: 13 ccgagctgcatacttccttacatgcccatactatatcataaatggatatggaatgtaaag 72
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 7 ccgagctgcatacttccttacatgcccatactatatcagtaatggatatggaatgtaaag 66
Query: 73 aagtatgtagaacgg 87
|||||||||||||||
Sbjct: 67 aagtatgtagaacgg 81
>38126_cbr-mir-1:mirbase
Length = 94
Score = 109 bits (55), Expect = 4e-25
Identities = 70/75 (93%)
Strand = Plus / Plus
Query: 13 ccgagctgcatacttccttacatgcccatactatatcataaatggatatggaatgtaaag 72
|||||||||||||||||||||||||||||||| || | ||||||||||||||||||||
Sbjct: 8 ccgagctgcatacttccttacatgcccatactgtactgtgaatggatatggaatgtaaag 67
Query: 73 aagtatgtagaacgg 87
|||||||||||||||
Sbjct: 68 aagtatgtagaacgg 82
>38719_cte-mir-1:mirbase
Length = 94
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 59 tatggaatgtaaagaagtatgtag 82
||||||||||||||||||||||||
Sbjct: 57 tatggaatgtaaagaagtatgtag 80
>38847_lgi-mir-1:mirbase
Length = 92
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 59 tatggaatgtaaagaagtatgta 81
|||||||||||||||||||||||
Sbjct: 54 tatggaatgtaaagaagtatgta 76
>38595_ppc-mir-1:mirbase
Length = 104
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 59 tatggaatgtaaagaagtatgta 81
|||||||||||||||||||||||
Sbjct: 65 tatggaatgtaaagaagtatgta 87
>24644_bfl-mir-1:mirbase
Length = 96
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 59 tatggaatgtaaagaagtatgta 81
|||||||||||||||||||||||
Sbjct: 54 tatggaatgtaaagaagtatgta 76
>25417_pma-mir-1c:mirbase
Length = 92
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 59 tatggaatgtaaagaagtatgta 81
|||||||||||||||||||||||
Sbjct: 55 tatggaatgtaaagaagtatgta 77
>25684_xtr-mir-1a-1:mirbase
Length = 84
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 59 tatggaatgtaaagaagtatgta 81
|||||||||||||||||||||||
Sbjct: 51 tatggaatgtaaagaagtatgta 73
>25685_xtr-mir-1a-2:mirbase
Length = 71
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 59 tatggaatgtaaagaagtatgta 81
|||||||||||||||||||||||
Sbjct: 45 tatggaatgtaaagaagtatgta 67
>25879_gga-mir-1a-1:mirbase
Length = 71
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 59 tatggaatgtaaagaagtatgta 81
|||||||||||||||||||||||
Sbjct: 44 tatggaatgtaaagaagtatgta 66
>25880_gga-mir-1a-2:mirbase
Length = 85
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 59 tatggaatgtaaagaagtatgta 81
|||||||||||||||||||||||
Sbjct: 51 tatggaatgtaaagaagtatgta 73
>26388_tgu-mir-1-1:mirbase
Length = 72
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 59 tatggaatgtaaagaagtatgta 81
|||||||||||||||||||||||
Sbjct: 39 tatggaatgtaaagaagtatgta 61
>26389_tgu-mir-1-2:mirbase
Length = 72
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 59 tatggaatgtaaagaagtatgta 81
|||||||||||||||||||||||
Sbjct: 39 tatggaatgtaaagaagtatgta 61
>26613_cfa-mir-1-1:mirbase
Length = 59
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 59 tatggaatgtaaagaagtatgta 81
|||||||||||||||||||||||
Sbjct: 37 tatggaatgtaaagaagtatgta 59
>26614_cfa-mir-1-2:mirbase
Length = 59
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 59 tatggaatgtaaagaagtatgta 81
|||||||||||||||||||||||
Sbjct: 37 tatggaatgtaaagaagtatgta 59
>26936_eca-mir-1:mirbase
Length = 78
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 59 tatggaatgtaaagaagtatgta 81
|||||||||||||||||||||||
Sbjct: 48 tatggaatgtaaagaagtatgta 70
>26937_eca-mir-1-2:mirbase
Length = 76
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 59 tatggaatgtaaagaagtatgta 81
|||||||||||||||||||||||
Sbjct: 47 tatggaatgtaaagaagtatgta 69
>27327_mdo-mir-1:mirbase
Length = 86
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 59 tatggaatgtaaagaagtatgta 81
|||||||||||||||||||||||
Sbjct: 51 tatggaatgtaaagaagtatgta 73
>27640_mml-mir-1-1:mirbase
Length = 77
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 59 tatggaatgtaaagaagtatgta 81
|||||||||||||||||||||||
Sbjct: 47 tatggaatgtaaagaagtatgta 69
>27641_mml-mir-1-2:mirbase
Length = 72
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 59 tatggaatgtaaagaagtatgta 81
|||||||||||||||||||||||
Sbjct: 44 tatggaatgtaaagaagtatgta 66
>28350_hsa-mir-1-1:mirbase
Length = 71
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 59 tatggaatgtaaagaagtatgta 81
|||||||||||||||||||||||
Sbjct: 44 tatggaatgtaaagaagtatgta 66
>28351_hsa-mir-1-2:mirbase
Length = 85
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 59 tatggaatgtaaagaagtatgta 81
|||||||||||||||||||||||
Sbjct: 51 tatggaatgtaaagaagtatgta 73
>30036_ppa-mir-1:mirbase
Length = 85
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 59 tatggaatgtaaagaagtatgta 81
|||||||||||||||||||||||
Sbjct: 51 tatggaatgtaaagaagtatgta 73
>30137_ptr-mir-1-1:mirbase
Length = 70
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 59 tatggaatgtaaagaagtatgta 81
|||||||||||||||||||||||
Sbjct: 43 tatggaatgtaaagaagtatgta 65
>30138_ptr-mir-1-2:mirbase
Length = 84
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 59 tatggaatgtaaagaagtatgta 81
|||||||||||||||||||||||
Sbjct: 51 tatggaatgtaaagaagtatgta 73
>30742_ppy-mir-1-1:mirbase
Length = 71
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 59 tatggaatgtaaagaagtatgta 81
|||||||||||||||||||||||
Sbjct: 44 tatggaatgtaaagaagtatgta 66
>31416_oan-mir-1a:mirbase
Length = 102
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 59 tatggaatgtaaagaagtatgta 81
|||||||||||||||||||||||
Sbjct: 60 tatggaatgtaaagaagtatgta 82
>31763_mmu-mir-1a-1:mirbase
Length = 77
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 59 tatggaatgtaaagaagtatgta 81
|||||||||||||||||||||||
Sbjct: 47 tatggaatgtaaagaagtatgta 69
>31764_mmu-mir-1a-2:mirbase
Length = 72
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 59 tatggaatgtaaagaagtatgta 81
|||||||||||||||||||||||
Sbjct: 45 tatggaatgtaaagaagtatgta 67
>31765_mmu-mir-1b:mirbase
Length = 122
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 59 tatggaatgtaaagaagtatgta 81
|||||||||||||||||||||||
Sbjct: 63 tatggaatgtaaagaagtatgta 41
>31766_mmu-mir-1b:mirbase
Length = 122
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 59 tatggaatgtaaagaagtatgta 81
|||||||||||||||||||||||
Sbjct: 63 tatggaatgtaaagaagtatgta 41
>33119_bta-mir-1-1:mirbase
Length = 76
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 59 tatggaatgtaaagaagtatgta 81
|||||||||||||||||||||||
Sbjct: 47 tatggaatgtaaagaagtatgta 69
>33120_bta-mir-1-2:mirbase
Length = 85
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 59 tatggaatgtaaagaagtatgta 81
|||||||||||||||||||||||
Sbjct: 51 tatggaatgtaaagaagtatgta 73
>33905_ssc-mir-1:mirbase
Length = 108
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 59 tatggaatgtaaagaagtatgta 81
|||||||||||||||||||||||
Sbjct: 62 tatggaatgtaaagaagtatgta 84
>34184_dre-mir-1-1:mirbase
Length = 106
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 59 tatggaatgtaaagaagtatgta 81
|||||||||||||||||||||||
Sbjct: 60 tatggaatgtaaagaagtatgta 82
>34185_dre-mir-1-2:mirbase
Length = 87
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 59 tatggaatgtaaagaagtatgta 81
|||||||||||||||||||||||
Sbjct: 52 tatggaatgtaaagaagtatgta 74
>34535_fru-mir-1:mirbase
Length = 76
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 59 tatggaatgtaaagaagtatgta 81
|||||||||||||||||||||||
Sbjct: 47 tatggaatgtaaagaagtatgta 69
>34683_tni-mir-1:mirbase
Length = 92
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 59 tatggaatgtaaagaagtatgta 81
|||||||||||||||||||||||
Sbjct: 55 tatggaatgtaaagaagtatgta 77
>34806_spu-mir-1:mirbase
Length = 96
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 59 tatggaatgtaaagaagtatgta 81
|||||||||||||||||||||||
Sbjct: 58 tatggaatgtaaagaagtatgta 80
>24806_cin-mir-1:mirbase
Length = 95
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 58 atatggaatgtaaagaagtatg 79
||||||||||||||||||||||
Sbjct: 71 atatggaatgtaaagaagtatg 92
>24807_cin-mir-1:mirbase
Length = 95
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 58 atatggaatgtaaagaagtatg 79
||||||||||||||||||||||
Sbjct: 71 atatggaatgtaaagaagtatg 92
>25346_odi-mir-1c:mirbase
Length = 102
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 59 tatggaatgtaaagaagtatgt 80
||||||||||||||||||||||
Sbjct: 64 tatggaatgtaaagaagtatgt 85
>35166_aae-mir-1:mirbase
Length = 76
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 58 atatggaatgtaaagaagtatg 79
||||||||||||||||||||||
Sbjct: 45 atatggaatgtaaagaagtatg 66
>35512_bmo-mir-1a:mirbase
Length = 85
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 58 atatggaatgtaaagaagtatg 79
||||||||||||||||||||||
Sbjct: 50 atatggaatgtaaagaagtatg 71
>35513_bmo-mir-1b:mirbase
Length = 79
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 58 atatggaatgtaaagaagtatg 79
||||||||||||||||||||||
Sbjct: 33 atatggaatgtaaagaagtatg 12
>36075_dan-mir-1:mirbase
Length = 88
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 58 atatggaatgtaaagaagtatg 79
||||||||||||||||||||||
Sbjct: 51 atatggaatgtaaagaagtatg 72
>36152_der-mir-1:mirbase
Length = 88
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 58 atatggaatgtaaagaagtatg 79
||||||||||||||||||||||
Sbjct: 51 atatggaatgtaaagaagtatg 72
>36235_dgr-mir-1:mirbase
Length = 87
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 58 atatggaatgtaaagaagtatg 79
||||||||||||||||||||||
Sbjct: 50 atatggaatgtaaagaagtatg 71
>36319_dme-mir-1:mirbase
Length = 91
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 58 atatggaatgtaaagaagtatg 79
||||||||||||||||||||||
Sbjct: 53 atatggaatgtaaagaagtatg 74
>36320_dme-mir-1:mirbase
Length = 91
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 58 atatggaatgtaaagaagtatg 79
||||||||||||||||||||||
Sbjct: 53 atatggaatgtaaagaagtatg 74
>36751_dmo-mir-1:mirbase
Length = 90
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 58 atatggaatgtaaagaagtatg 79
||||||||||||||||||||||
Sbjct: 53 atatggaatgtaaagaagtatg 74
>36824_dpe-mir-1:mirbase
Length = 87
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 58 atatggaatgtaaagaagtatg 79
||||||||||||||||||||||
Sbjct: 50 atatggaatgtaaagaagtatg 71
>36899_dps-mir-1:mirbase
Length = 88
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 58 atatggaatgtaaagaagtatg 79
||||||||||||||||||||||
Sbjct: 50 atatggaatgtaaagaagtatg 71
>37111_dse-mir-1:mirbase
Length = 88
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 58 atatggaatgtaaagaagtatg 79
||||||||||||||||||||||
Sbjct: 51 atatggaatgtaaagaagtatg 72
>37190_dsi-mir-1:mirbase
Length = 88
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 58 atatggaatgtaaagaagtatg 79
||||||||||||||||||||||
Sbjct: 51 atatggaatgtaaagaagtatg 72
>37327_dvi-mir-1:mirbase
Length = 87
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 58 atatggaatgtaaagaagtatg 79
||||||||||||||||||||||
Sbjct: 50 atatggaatgtaaagaagtatg 71
>37402_dwi-mir-1:mirbase
Length = 86
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 58 atatggaatgtaaagaagtatg 79
||||||||||||||||||||||
Sbjct: 52 atatggaatgtaaagaagtatg 73
>37480_dya-mir-1:mirbase
Length = 89
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 58 atatggaatgtaaagaagtatg 79
||||||||||||||||||||||
Sbjct: 52 atatggaatgtaaagaagtatg 73
>34959_isc-mir-1:mirbase
Length = 92
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 59 tatggaatgtaaagaagtatg 79
|||||||||||||||||||||
Sbjct: 54 tatggaatgtaaagaagtatg 74
>34995_dpu-mir-1:mirbase
Length = 94
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 59 tatggaatgtaaagaagtatg 79
|||||||||||||||||||||
Sbjct: 56 tatggaatgtaaagaagtatg 76
>35042_api-mir-1:mirbase
Length = 82
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 59 tatggaatgtaaagaagtatg 79
|||||||||||||||||||||
Sbjct: 59 tatggaatgtaaagaagtatg 79
>35270_aga-mir-1:mirbase
Length = 98
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 59 tatggaatgtaaagaagtatg 79
|||||||||||||||||||||
Sbjct: 60 tatggaatgtaaagaagtatg 80
>35338_ame-mir-1-1:mirbase
Length = 83
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 59 tatggaatgtaaagaagtatg 79
|||||||||||||||||||||
Sbjct: 50 tatggaatgtaaagaagtatg 70
>35339_ame-mir-1-2:mirbase
Length = 83
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 59 tatggaatgtaaagaagtatg 79
|||||||||||||||||||||
Sbjct: 50 tatggaatgtaaagaagtatg 70
>36003_cqu-mir-1:mirbase
Length = 77
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 59 tatggaatgtaaagaagtatg 79
|||||||||||||||||||||
Sbjct: 47 tatggaatgtaaagaagtatg 67
>37569_ngi-mir-1:mirbase
Length = 69
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 59 tatggaatgtaaagaagtatg 79
|||||||||||||||||||||
Sbjct: 40 tatggaatgtaaagaagtatg 60
>37630_nvi-mir-1:mirbase
Length = 81
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 59 tatggaatgtaaagaagtatg 79
|||||||||||||||||||||
Sbjct: 48 tatggaatgtaaagaagtatg 68
>37685_tca-mir-1:mirbase
Length = 72
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 59 tatggaatgtaaagaagtatg 79
|||||||||||||||||||||
Sbjct: 45 tatggaatgtaaagaagtatg 65
>37686_tca-mir-1:mirbase
Length = 72
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 59 tatggaatgtaaagaagtatg 79
|||||||||||||||||||||
Sbjct: 45 tatggaatgtaaagaagtatg 65
