miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00103;mir-1;AAGD02012398.1/27745-27823 31234:Caenorhabditis
remanei
Length = 79
Score = 133 bits (67), Expect = 5e-31
Identities = 73/75 (97%)
Strand = Plus / Plus
Query: 13 ccgagctgcatacttccttacatgcccatactatatcataaatggatatggaatgtaaag 72
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 3 ccgagctgcatacttccttacatgcccatactatatcagtaatggatatggaatgtaaag 62
Query: 73 aagtatgtagaacgg 87
|||||||||||||||
Sbjct: 63 aagtatgtagaacgg 77
>RF00103;mir-1;CAAC02000511.1/295307-295229 6238:Caenorhabditis
briggsae
Length = 79
Score = 109 bits (55), Expect = 7e-24
Identities = 70/75 (93%)
Strand = Plus / Plus
Query: 13 ccgagctgcatacttccttacatgcccatactatatcataaatggatatggaatgtaaag 72
|||||||||||||||||||||||||||||||| || | ||||||||||||||||||||
Sbjct: 3 ccgagctgcatacttccttacatgcccatactgtactgtgaatggatatggaatgtaaag 62
Query: 73 aagtatgtagaacgg 87
|||||||||||||||
Sbjct: 63 aagtatgtagaacgg 77
>RF00103;mir-1;ABLE02030552.1/3109-3195 281687:Caenorhabditis
japonica
Length = 87
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 57 gatatggaatgtaaagaagtatgtaga 83
|||||||||||||||||||||||||||
Sbjct: 55 gatatggaatgtaaagaagtatgtaga 81
Score = 48.1 bits (24), Expect = 2e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 13 ccgagctgcatacttccttacatgcccatact 44
||||||||||||||||||| ||| ||||||||
Sbjct: 3 ccgagctgcatacttccttgcatacccatact 34
>RF00103;mir-1;ABIR01002879.1/50521-50595 6334:Trichinella
spiralis
Length = 75
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 57 gatatggaatgtaaagaagtatgtag 82
||||||||||||||||||||||||||
Sbjct: 43 gatatggaatgtaaagaagtatgtag 68
>RF00103;mir-1;CABB01004866.1/4222-4314 6306:Meloidogyne incognita
(southern root-knot nematode)
Length = 93
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 59 tatggaatgtaaagaagtatgtag 82
||||||||||||||||||||||||
Sbjct: 63 tatggaatgtaaagaagtatgtag 86
>RF00103;mir-1;ABKE01004849.1/5673-5592 54126:Pristionchus
pacificus
Length = 82
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 59 tatggaatgtaaagaagtatgta 81
|||||||||||||||||||||||
Sbjct: 52 tatggaatgtaaagaagtatgta 74
>RF00103;mir-1;AAGJ02015940.1/12697-12776 7668:Strongylocentrotus
purpuratus
Length = 80
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 59 tatggaatgtaaagaagtatgta 81
|||||||||||||||||||||||
Sbjct: 50 tatggaatgtaaagaagtatgta 72
>RF00103;mir-1;AAGV020639359.1/176-251 9361:Dasypus novemcinctus
(nine-banded armadillo)
Length = 76
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 59 tatggaatgtaaagaagtatgta 81
|||||||||||||||||||||||
Sbjct: 46 tatggaatgtaaagaagtatgta 68
>RF00103;mir-1;AALT01502699.1/11496-11572 42254:Sorex araneus
(European shrew)
Length = 77
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 59 tatggaatgtaaagaagtatgta 81
|||||||||||||||||||||||
Sbjct: 47 tatggaatgtaaagaagtatgta 69
>RF00103;mir-1;AANU01221577.1/6692-6768 9544:Macaca mulatta
(rhesus monkey)
Length = 77
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 59 tatggaatgtaaagaagtatgta 81
|||||||||||||||||||||||
Sbjct: 47 tatggaatgtaaagaagtatgta 69
>RF00103;mir-1;CAAA01046548.1/3034-3110 10090:Mus musculus (house
mouse)
Length = 77
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 59 tatggaatgtaaagaagtatgta 81
|||||||||||||||||||||||
Sbjct: 47 tatggaatgtaaagaagtatgta 69
>RF00103;mir-1;AAYZ01364871.1/459-535 9978:Ochotona princeps
(American pika)
Length = 77
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 59 tatggaatgtaaagaagtatgta 81
|||||||||||||||||||||||
Sbjct: 47 tatggaatgtaaagaagtatgta 69
>RF00103;mir-1;ABRQ01120821.1/5388-5463 9813:Procavia capensis
(cape rock hyrax)
Length = 76
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 59 tatggaatgtaaagaagtatgta 81
|||||||||||||||||||||||
Sbjct: 46 tatggaatgtaaagaagtatgta 68
>RF00103;mir-1;ABRQ01775995.1/455-531 9813:Procavia capensis (cape
rock hyrax)
Length = 77
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 59 tatggaatgtaaagaagtatgta 81
|||||||||||||||||||||||
Sbjct: 47 tatggaatgtaaagaagtatgta 69
>RF00103;mir-1;AAWZ01009147.1/60407-60483 28377:Anolis
carolinensis (green anole)
Length = 77
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 59 tatggaatgtaaagaagtatgta 81
|||||||||||||||||||||||
Sbjct: 47 tatggaatgtaaagaagtatgta 69
>RF00103;mir-1;AADN02019229.1/42946-42870 9031:Gallus gallus
(chicken)
Length = 77
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 59 tatggaatgtaaagaagtatgta 81
|||||||||||||||||||||||
Sbjct: 47 tatggaatgtaaagaagtatgta 69
>RF00103;mir-1;AC147912.2/160163-160239 8364:Xenopus (Silurana)
tropicalis (western clawed frog)
Length = 77
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 59 tatggaatgtaaagaagtatgta 81
|||||||||||||||||||||||
Sbjct: 47 tatggaatgtaaagaagtatgta 69
>RF00103;mir-1;CAAB01000636.1/82977-83054 31033:Takifugu rubripes
Length = 78
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 59 tatggaatgtaaagaagtatgta 81
|||||||||||||||||||||||
Sbjct: 48 tatggaatgtaaagaagtatgta 70
>RF00103;mir-1;BAAF04064761.1/1030-1106 8090:Oryzias latipes
(Japanese medaka)
Length = 77
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 59 tatggaatgtaaagaagtatgta 81
|||||||||||||||||||||||
Sbjct: 47 tatggaatgtaaagaagtatgta 69
>RF00103;mir-1;BAAE01219800.1/733-656 8090:Oryzias latipes
(Japanese medaka)
Length = 78
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 59 tatggaatgtaaagaagtatgta 81
|||||||||||||||||||||||
Sbjct: 48 tatggaatgtaaagaagtatgta 70
>RF00103;mir-1;AAVX01164741.1/393-468 7868:Callorhinchus milii
(ghost shark)
Length = 76
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 59 tatggaatgtaaagaagtatgta 81
|||||||||||||||||||||||
Sbjct: 46 tatggaatgtaaagaagtatgta 68
>RF00103;mir-1;AAVX01053845.1/1717-1792 7868:Callorhinchus milii
(ghost shark)
Length = 76
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 59 tatggaatgtaaagaagtatgta 81
|||||||||||||||||||||||
Sbjct: 46 tatggaatgtaaagaagtatgta 68
>RF00103;mir-1;ABEP02026713.1/2484-2559 7739:Branchiostoma
floridae (Florida lancelet)
Length = 76
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 59 tatggaatgtaaagaagtatgta 81
|||||||||||||||||||||||
Sbjct: 46 tatggaatgtaaagaagtatgta 68
>RF00103;mir-1;BAAB01105211.1/2094-2168 7091:Bombyx mori (domestic
silkworm)
Length = 75
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 58 atatggaatgtaaagaagtatg 79
||||||||||||||||||||||
Sbjct: 44 atatggaatgtaaagaagtatg 65
>RF00103;mir-1;AAGE02025061.1/66260-66336 7159:Aedes aegypti
(yellow fever mosquito)
Length = 77
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 58 atatggaatgtaaagaagtatg 79
||||||||||||||||||||||
Sbjct: 46 atatggaatgtaaagaagtatg 67
>RF00103;mir-1;AAPT01020974.1/21428-21504 7222:Drosophila
grimshawi
Length = 77
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 58 atatggaatgtaaagaagtatg 79
||||||||||||||||||||||
Sbjct: 46 atatggaatgtaaagaagtatg 67
>RF00103;mir-1;AAPU01010689.1/17805-17881 7230:Drosophila
mojavensis
Length = 77
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 58 atatggaatgtaaagaagtatg 79
||||||||||||||||||||||
Sbjct: 46 atatggaatgtaaagaagtatg 67
