miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00047;mir-2;Z83731.1/29638-29566 6239:Caenorhabditis elegans
Length = 73
Score = 145 bits (73), Expect = 1e-34
Identities = 73/73 (100%)
Strand = Plus / Plus
Query: 15 aaagccatcaaagcggtggttgatgtgttgcaaattatgactttcatatcacagccagct 74
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 aaagccatcaaagcggtggttgatgtgttgcaaattatgactttcatatcacagccagct 60
Query: 75 ttgatgtgctgcc 87
|||||||||||||
Sbjct: 61 ttgatgtgctgcc 73
>RF00047;mir-2;CAAC02000589.1/1009397-1009308 6238:Caenorhabditis
briggsae
Length = 90
Score = 58.0 bits (29), Expect = 2e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 57 ttcatatcacagccagctttgatgtgctg 85
|||||||||||||||||||||||||||||
Sbjct: 60 ttcatatcacagccagctttgatgtgctg 88
>RF00047;mir-2;AAGD02006756.1/79087-79015 31234:Caenorhabditis
remanei
Length = 73
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 58 tcatatcacagccagctttgatgtgct 84
|||||||||||||||||||||||||||
Sbjct: 44 tcatatcacagccagctttgatgtgct 70
>RF00047;mir-2;ABEG01010026.1/20408-20482 135651:Caenorhabditis
brenneri
Length = 75
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 58 tcatatcacagccagctttgatgtgct 84
|||||||||||||||||||||||||||
Sbjct: 46 tcatatcacagccagctttgatgtgct 72
>RF00047;mir-2;AAQA01003088.1/958-1028 6279:Brugia malayi
Length = 71
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 57 ttcatatcacagccagctttgatgtg 82
||||||||||||||||||||||||||
Sbjct: 41 ttcatatcacagccagctttgatgtg 66
>RF00047;mir-2;AAZX01013101.1/19937-20004 7425:Nasonia vitripennis
(jewel wasp)
Length = 68
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 59 catatcacagccagctttgatgtgc 83
|||||||||||||||||||||||||
Sbjct: 40 catatcacagccagctttgatgtgc 64
>RF00047;mir-2;ABJB010692301.1/11251-11184 6945:Ixodes scapularis
(black-legged tick)
Length = 68
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 56 tttcatatcacagccagctttgatg 80
|||||||||||||||||||||||||
Sbjct: 37 tttcatatcacagccagctttgatg 61
>RF00047;mir-2;AAZO01007079.1/41194-41254 121224:Pediculus humanus
corporis (human body louse)
Length = 61
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 57 ttcatatcacagccagctttgatg 80
||||||||||||||||||||||||
Sbjct: 31 ttcatatcacagccagctttgatg 54
>RF00047;mir-2;AADG05000005.1/25868-25935 7460:Apis mellifera
(honey bee)
Length = 68
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 57 ttcatatcacagccagctttgatg 80
||||||||||||||||||||||||
Sbjct: 38 ttcatatcacagccagctttgatg 61
>RF00047;mir-2;AAGE02012793.1/16205-16139 7159:Aedes aegypti
(yellow fever mosquito)
Length = 67
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 58 tcatatcacagccagctttgatgtgctg 85
||||||||||||||||||||||| ||||
Sbjct: 38 tcatatcacagccagctttgatgagctg 65
>RF00047;mir-2;AASC02030054.1/10531-10596 6500:Aplysia californica
(California sea hare)
Length = 66
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 58 tcatatcacagccagctttgatg 80
|||||||||||||||||||||||
Sbjct: 37 tcatatcacagccagctttgatg 59
>RF00047;mir-2;AAZO01007079.1/41397-41469 121224:Pediculus humanus
corporis (human body louse)
Length = 73
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 58 tcatatcacagccagctttgatg 80
|||||||||||||||||||||||
Sbjct: 44 tcatatcacagccagctttgatg 66
>RF00047;mir-2;ABLF01009126.1/4189-4122 7029:Acyrthosiphon pisum
(pea aphid)
Length = 68
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 58 tcatatcacagccagctttgatg 80
|||||||||||||||||||||||
Sbjct: 39 tcatatcacagccagctttgatg 61
>RF00047;mir-2;AAWU01020422.1/10370-10299 7176:Culex
quinquefasciatus (southern house mosquito)
Length = 72
Score = 46.1 bits (23), Expect = 8e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 59 catatcacagccagctttgatgtgctg 85
|||||||||||||||||||||| ||||
Sbjct: 44 catatcacagccagctttgatgagctg 70
>RF00047;mir-2;AAAB01008807.1/11607145-11607220 180454:Anopheles
gambiae str. PEST
Length = 76
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 58 tcatatcacagccagctttgatg 80
|||||||||||||||||||||||
Sbjct: 47 tcatatcacagccagctttgatg 69
>RF00047;mir-2;AAJJ01001714.1/2663-2727 7070:Tribolium castaneum
(red flour beetle)
Length = 65
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 58 tcatatcacagccagctttgatg 80
|||||||||||||||||||||||
Sbjct: 36 tcatatcacagccagctttgatg 58
>RF00047;mir-2;AAJJ01001714.1/2814-2878 7070:Tribolium castaneum
(red flour beetle)
Length = 65
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 58 tcatatcacagccagctttgatg 80
|||||||||||||||||||||||
Sbjct: 36 tcatatcacagccagctttgatg 58
>RF00047;mir-2;AASC02030054.1/11043-11110 6500:Aplysia californica
(California sea hare)
Length = 68
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 59 catatcacagccagctttgatg 80
||||||||||||||||||||||
Sbjct: 40 catatcacagccagctttgatg 61
>RF00047;mir-2;BABH01007323.1/5785-5717 7091:Bombyx mori (domestic
silkworm)
Length = 69
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 59 catatcacagccagctttgatg 80
||||||||||||||||||||||
Sbjct: 41 catatcacagccagctttgatg 62
>RF00047;mir-2;AAQB01006412.1/121627-121699 7260:Drosophila
willistoni
Length = 73
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 59 catatcacagccagctttgatg 80
||||||||||||||||||||||
Sbjct: 45 catatcacagccagctttgatg 66
>RF00047;mir-2;AAIZ01000971.1/3321-3388 7234:Drosophila persimilis
Length = 68
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 57 ttcatatcacagccagctttga 78
||||||||||||||||||||||
Sbjct: 39 ttcatatcacagccagctttga 60
>RF00047;mir-2;AAFS01000655.1/43310-43241 46245:Drosophila
pseudoobscura pseudoobscura
Length = 70
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 59 catatcacagccagctttgatg 80
||||||||||||||||||||||
Sbjct: 42 catatcacagccagctttgatg 63
>RF00047;mir-2;FJ485602.1/38-106 7227:Drosophila melanogaster
(fruit fly)
Length = 69
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 57 ttcatatcacagccagctttga 78
||||||||||||||||||||||
Sbjct: 39 ttcatatcacagccagctttga 60
>RF00047;mir-2;AASS01038618.1/536-465 7240:Drosophila simulans
Length = 72
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 59 catatcacagccagctttgatg 80
||||||||||||||||||||||
Sbjct: 44 catatcacagccagctttgatg 65
>RF00047;mir-2;AAPU01010520.1/77496-77569 7230:Drosophila
mojavensis
Length = 74
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 59 catatcacagccagctttgatg 80
||||||||||||||||||||||
Sbjct: 46 catatcacagccagctttgatg 67
>RF00047;mir-2;AANI01013749.1/162154-162082 7244:Drosophila
virilis
Length = 73
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 59 catatcacagccagctttgatg 80
||||||||||||||||||||||
Sbjct: 45 catatcacagccagctttgatg 66
>RF00047;mir-2;AANI01013749.1/161880-161816 7244:Drosophila
virilis
Length = 65
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 59 catatcacagccagctttgatg 80
||||||||||||||||||||||
Sbjct: 37 catatcacagccagctttgatg 58
