miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00711;mir-449;AC006761.1/23565-23479 6239:Caenorhabditis
elegans
Length = 87
Score = 172 bits (87), Expect = 5e-43
Identities = 87/87 (100%)
Strand = Plus / Plus
Query: 1 cggacaatgctcgagaggcagtgtggttagctggttgcatatttccttgacaacggctac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 cggacaatgctcgagaggcagtgtggttagctggttgcatatttccttgacaacggctac 60
Query: 61 cttcactgccaccccgaacatgtcgtc 87
|||||||||||||||||||||||||||
Sbjct: 61 cttcactgccaccccgaacatgtcgtc 87
>RF00711;mir-449;AAGD02002335.1/13539-13618 31234:Caenorhabditis
remanei
Length = 80
Score = 127 bits (64), Expect = 3e-29
Identities = 73/76 (96%)
Strand = Plus / Plus
Query: 8 tgctcgagaggcagtgtggttagctggttgcatatttccttgacaacggctaccttcact 67
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 4 tgctcgagaggcagtgtggttagctggttgcatattgaattgacaacggctaccttcact 63
Query: 68 gccaccccgaacatgt 83
||||||||||||||||
Sbjct: 64 gccaccccgaacatgt 79
>RF00711;mir-449;ABLE02004150.1/46650-46564 281687:Caenorhabditis
japonica
Length = 87
Score = 95.6 bits (48), Expect = 1e-19
Identities = 69/76 (90%)
Strand = Plus / Plus
Query: 8 tgctcgagaggcagtgtggttagctggttgcatatttccttgacaacggctaccttcact 67
|||||| |||||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct: 8 tgctcgggaggcagtgtggttagctggttgcatgatgttttgacaacggctaccttcact 67
Query: 68 gccaccccgaacatgt 83
|||||||||| |||||
Sbjct: 68 gccaccccgatcatgt 83
>RF00711;mir-449;AC084584.1/32185-32101 6238:Caenorhabditis
briggsae
Length = 85
Score = 83.8 bits (42), Expect = 4e-16
Identities = 64/70 (91%), Gaps = 1/70 (1%)
Strand = Plus / Plus
Query: 15 gaggcagtgtggttagctggttgcatatttcc-ttgacaacggctaccttcactgccacc 73
||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 13 gaggcagtgtggttagctggttgcatacacaggttgacaacggctaccttcactgccacc 72
Query: 74 ccgaacatgt 83
||||||||||
Sbjct: 73 ccgaacatgt 82
