miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00794;mir-42;Z70213.1/12424-12524 6239:Caenorhabditis elegans
Length = 101
Score = 188 bits (95), Expect = 9e-48
Identities = 95/95 (100%)
Strand = Plus / Plus
Query: 1 ttcgcggacctttgtgggtgtttgctttttcggtgaagttgtcttccgtagcttcttctt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6 ttcgcggacctttgtgggtgtttgctttttcggtgaagttgtcttccgtagcttcttctt 65
Query: 61 caccgggttaacatctacagaggtccaaaaagggg 95
|||||||||||||||||||||||||||||||||||
Sbjct: 66 caccgggttaacatctacagaggtccaaaaagggg 100
>RF00794;mir-42;AAGD02000348.1/78552-78654 31234:Caenorhabditis
remanei
Length = 103
Score = 79.8 bits (40), Expect = 6e-15
Identities = 75/85 (88%), Gaps = 5/85 (5%)
Strand = Plus / Plus
Query: 5 cggacctttgtgggtgtttgctttttcggtgaagttgtcttccgtagctt---cttcttc 61
||||||||||||| ||||| |||||||||||||||||| ||||| | | |||||||
Sbjct: 11 cggacctttgtggatgtttcctttttcggtgaagttgt--tccgttgaattatcttcttc 68
Query: 62 accgggttaacatctacagaggtcc 86
|||||||||||||||||||||||||
Sbjct: 69 accgggttaacatctacagaggtcc 93
>RF00794;mir-42;CAAC02000450.1/2292468-2292373 6238:Caenorhabditis
briggsae
Length = 96
Score = 63.9 bits (32), Expect = 3e-10
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 55 cttcttcaccgggttaacatctacagaggtcc 86
||||||||||||||||||||||||||||||||
Sbjct: 55 cttcttcaccgggttaacatctacagaggtcc 86
>RF00794;mir-42;ABEG01022483.1/35537-35633 135651:Caenorhabditis
brenneri
Length = 97
Score = 61.9 bits (31), Expect = 1e-09
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 56 ttcttcaccgggttaacatctacagaggtcc 86
|||||||||||||||||||||||||||||||
Sbjct: 57 ttcttcaccgggttaacatctacagaggtcc 87
>RF00794;mir-42;ABLE02021980.1/2524-2428 281687:Caenorhabditis
japonica
Length = 97
Score = 58.0 bits (29), Expect = 2e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 58 cttcaccgggttaacatctacagaggtcc 86
|||||||||||||||||||||||||||||
Sbjct: 60 cttcaccgggttaacatctacagaggtcc 88
